RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	SPS22	P25380	463 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	GSH1	P32477	678 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	RPS0A	P32905	252 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	BLI1	P35727	113 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	DBP7	P36120	742 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	ERV46	P39727	415 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	CIN1	P40987	1014 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	STB1	P42845	420 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	NMD5	P46970	1048 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	FMP33	P46998	180 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	SHE4	P51534	789 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	TAF6	P53040	516 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	COG1	P53079	417 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	RRT6	P53117	311 aa	Predicted RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	UTP6	Q02354	440 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	DIG1	Q03063	452 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	RSC9	Q03124	581 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	YMR018W	Q04364	514 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	TDA9	Q04545	1251 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	DON1	Q05610	365 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	VAM6	Q07468	1049 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	RIX7	Q07844	837 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	GET4	Q12125	312 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	CYB2	P00175	591 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	CLN3	P13365	580 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	SEC63	P14906	663 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	SPO16	P17122	198 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	CKA2	P19454	339 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	TRX2	P22803	104 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	PTC6	P25646	442 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	EFB1	P32471	206 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	ANP1	P32629	500 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	RIB7	P33312	244 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	HES1	P35843	434 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	MYO3	P36006	1272 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	YBR032W	P38223	100 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	TIF5	P38431	405 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	RFC3	P38629	340 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	PDS1	P40316	373 aa	Predicted RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	BNA1	P47096	177 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	YNL247W	P53852	767 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	PRP42	Q03776	544 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	NSE1	Q07913	336 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	CIR2	Q08822	631 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	LYS21	Q12122	440 aa	Known RBP	4.22	□□□□□ -1.73
HSP42	YDR171W	YPT6	Q99260	215 aa		4.22	□□□□□ -1.73
HSP42	YDR171W	YLR462W	O13556	202 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	RPL24A	P04449	155 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	YML003W	P0CF16	290 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	MRPL25	P23369	157 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	DPB2	P24482	689 aa	Predicted RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	LRE1	P25579	583 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	XRS2	P33301	854 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	TIF3	P34167	436 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	COY1	P34237	679 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	AST1	P35183	429 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YHL049C	P38722	271 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YEL075C	P39972	122 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	LCP5	P40079	357 aa	Predicted RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	YER189W	P40104	122 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YIL161W	P40449	235 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	SYG1	P40528	902 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YFL064C	P43540	174 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	SNO3	P43544	222 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	VMA10	P48836	114 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	FMS1	P50264	508 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	RET3	P53600	189 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YNL058C	P53947	316 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	TMA20	P89886	181 aa	Predicted RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	RPM2	Q02773	1202 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	SRL4	Q03085	281 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	SXM1	Q04175	944 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	MYO5	Q04439	1219 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	RLP24	Q07915	199 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	LEA1	Q08963	238 aa	Predicted RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	SWT1	Q12104	458 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	YBL111C	Q3E7Y5	667 aa		4.21	□□□□□ -1.74
HSP42	YDR171W	FKS1	P38631	1876 aa	Known RBP	4.21	□□□□□ -1.74
HSP42	YDR171W	YPR089W	O13585	888 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	ILS1	P09436	1072 aa	Known RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	TY2A-LR1	P0C2J4	438 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	TY2A-F	P0CX61	438 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	TY2A-GR2	P0CX62	438 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	CLB2	P24869	491 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	PTP1	P25044	335 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	TY2A-C	P25383	438 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	BRF1	P29056	596 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	RPT3	P33298	428 aa	Known RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	NUP120	P35729	1037 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	ULP2	P40537	1034 aa	Predicted RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	DIM1	P41819	318 aa	Known RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	IRC7	P43623	340 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	TOS3	P43637	560 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	BNA3	P47039	444 aa	Known RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	MIG2	P53035	382 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	LSG1	P53145	640 aa	Known RBP	4.2	□□□□□ -1.74
HSP42	YDR171W	YPR003C	P53394	754 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	TY2A-DR2	Q03483	438 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	FMN1	Q03778	218 aa		4.2	□□□□□ -1.74
HSP42	YDR171W	PPM1	Q04081	328 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms