RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	CDC24	P11433	854 aa	Predicted RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	GCD2	P12754	651 aa	Predicted RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	TAL1	P15019	335 aa	Known RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	CPR2	P23285	205 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	BUD5	P25300	642 aa	Predicted RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	GEX1	P25596	615 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	HXT1	P32465	570 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	YPT53	P36019	220 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	YKR015C	P36111	568 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	MIT1	P40002	666 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	CAB2	P40506	365 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	IAH1	P41734	238 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	RMR1	P53060	241 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	MNT4	P53745	580 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	RPS15	Q01855	142 aa	Known RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	RSN1	Q03516	953 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	IVY1	Q04934	453 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	RBS1	Q05672	457 aa	Known RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	ECM22	Q05958	814 aa	Predicted RBP	4.62	□□□□□ -1.67
KIN28	YDL108W	VPS74	Q06385	345 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	ATG17	Q06410	417 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	DCI1	Q08558	271 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	LAG2	Q92325	660 aa		4.62	□□□□□ -1.67
KIN28	YDL108W	CBS1	P14066	229 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SEC62	P21825	274 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	MRPL8	P22353	238 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SPO11	P23179	398 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	DPB2	P24482	689 aa	Predicted RBP	4.61	□□□□□ -1.67
KIN28	YDL108W	CNE1	P27825	502 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	YMC2	P38087	329 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	BZZ1	P38822	633 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SMF1	P38925	575 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SEC31	P38968	1273 aa	Known RBP	4.61	□□□□□ -1.67
KIN28	YDL108W	AGE2	P40529	298 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SNX4	P47057	423 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	COS12	P53053	380 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	CAF130	P53280	1122 aa	Predicted RBP	4.61	□□□□□ -1.67
KIN28	YDL108W	PET117	Q02771	107 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	USA1	Q03714	838 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	GIM5	Q04493	163 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	RTT103	Q05543	409 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	MSC3	Q05812	728 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	TLG2	Q08144	397 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	SWT1	Q12104	458 aa		4.61	□□□□□ -1.67
KIN28	YDL108W	CFT1	Q06632	1357 aa	Known RBP	4.61	□□□□□ -1.67
KIN28	YDL108W	YLR302C	O13544	120 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	RPN13	O13563	156 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	RAP1	P11938	827 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	RSR1	P13856	272 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	SIR1	P21691	654 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	CMK2	P22517	447 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	PRO3	P32263	286 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	PTK1	P36002	662 aa	Predicted RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	ADE17	P38009	592 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	MAL32	P38158	584 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	SRO77	P38163	1010 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	GDT1	P38301	280 aa	Predicted RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	LNP1	P38878	278 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	MNN9	P39107	395 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	SHQ1	P40486	507 aa	Predicted RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	CHS6	P40955	746 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	QRI1	P43123	477 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	GCD14	P46959	383 aa	Predicted RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	ASN1	P49089	572 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	MRK1	P50873	501 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	PNC1	P53184	216 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	YGR111W	P53265	400 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	MAL12	P53341	584 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	YNL134C	P53912	376 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	PPM1	Q04081	328 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	ROY1	Q04847	553 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	VPS38	Q05919	439 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	YLR455W	Q06188	304 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	ECM30	Q06673	1274 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	CMS1	Q07897	291 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	ABP140	Q08641	628 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	FMP40	Q08968	688 aa	Predicted RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	LYS21	Q12122	440 aa	Known RBP	4.6	□□□□□ -1.67
KIN28	YDL108W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
KIN28	YDL108W	UBX3	Q12229	455 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	ZPS1	Q12512	249 aa		4.6	□□□□□ -1.67
KIN28	YDL108W	YPR089W	O13585	888 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	CBP2	P03874	630 aa	Predicted RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	RPL1A	P0CX43	217 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	RPL1B	P0CX44	217 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	ARO3	P14843	370 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	DAP2	P18962	818 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	KGD1	P20967	1014 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	UTR1	P21373	530 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	YCK1	P23291	538 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	RIT1	P23796	513 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	PRP45	P28004	379 aa	Predicted RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	PRE2	P30656	287 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	TPS2	P31688	896 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	SEF1	P34228	1148 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	REG2	P38232	338 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	APD1	P38281	316 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	SDH8	P38345	138 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	YHR045W	P38775	560 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	SUR2	P38992	349 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 78 ms