RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	HUA2	Q12134	243 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	NHA1	Q99271	985 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	HES1	P35843	434 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	BMT2	P38278	337 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	YPT35	P38815	214 aa	Known RBP	13.71	□□□□□ -0.21
DEP1	YAL013W	GIM4	P40005	111 aa	Known RBP	13.71	□□□□□ -0.21
DEP1	YAL013W	IMA5	P40884	581 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	YJR030C	P47101	745 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	COQ5	P49017	307 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	PLB3	Q08108	686 aa		13.71	□□□□□ -0.21
DEP1	YAL013W	SLF1	Q12034	447 aa	Known RBP	13.71	□□□□□ -0.21
DEP1	YAL013W	YPL245W	Q12179	454 aa	Known RBP	13.71	□□□□□ -0.21
DEP1	YAL013W	EMC3	P36039	253 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	YBR071W	P38243	211 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	IST2	P38250	946 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	YFR020W	P43600	232 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	GCV1	P48015	400 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	SNO2	P53823	222 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	ROT1	Q03691	256 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	HSP31	Q04432	237 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	YCL012C	Q8J0M4	134 aa		13.7	□□□□□ -0.22
DEP1	YAL013W	PRT1	P06103	763 aa	Known RBP	13.69	□□□□□ -0.22
DEP1	YAL013W	HOM2	P13663	365 aa	Known RBP	13.69	□□□□□ -0.22
DEP1	YAL013W	POL30	P15873	258 aa	Known RBP	13.69	□□□□□ -0.22
DEP1	YAL013W	SLX5	P32828	619 aa	Known RBP	13.69	□□□□□ -0.22
DEP1	YAL013W	HXT5	P38695	592 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	WSC4	P38739	605 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	GIC1	P38785	314 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	FMO1	P38866	432 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	SUM1	P46676	1062 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	FAA4	P47912	694 aa	Known RBP	13.69	□□□□□ -0.22
DEP1	YAL013W	CWC24	P53769	259 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	YNL260C	P53846	198 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	ASA1	Q06822	443 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	SRO7	Q12038	1033 aa		13.69	□□□□□ -0.22
DEP1	YAL013W	TPK2	P06245	380 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	DST1	P07273	309 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	MRP13	P12686	339 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	RDS2	P19541	446 aa	Known RBP	13.68	□□□□□ -0.22
DEP1	YAL013W	CCA1	P21269	546 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	SIN4	P32259	974 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	TFC1	P32367	649 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	INM1	P38710	295 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	YJL070C	P40361	888 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	AYR1	P40471	297 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	NUP85	P46673	744 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	GTO1	P48239	356 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	GIP3	Q03016	1276 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	ATG26	Q06321	1198 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	13.68	□□□□□ -0.22	not detected
DEP1	YAL013W	YDR056C	Q12025	205 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	YVC1	Q12324	675 aa		13.68	□□□□□ -0.22
DEP1	YAL013W	SPT15	P13393	240 aa	Known RBP	13.67	□□□□□ -0.22
DEP1	YAL013W	HXT4	P32467	576 aa		13.67	□□□□□ -0.22
DEP1	YAL013W	ROT2	P38138	954 aa		13.67	□□□□□ -0.22
DEP1	YAL013W	HXT6	P39003	570 aa	Known RBP	13.67	□□□□□ -0.22
DEP1	YAL013W	HXT7	P39004	570 aa		13.67	□□□□□ -0.22
DEP1	YAL013W	NDE1	P40215	560 aa		13.67	□□□□□ -0.22
DEP1	YAL013W	YPR011C	Q12251	326 aa		13.67	□□□□□ -0.22
DEP1	YAL013W	RPL24A	P04449	155 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	RPS4A	P0CX35	261 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	RPS4B	P0CX36	261 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	SGV1	P23293	657 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	MGM101	P32787	269 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	MRPL37	P36532	105 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	AXL2	P38928	823 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	GGC1	P38988	300 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	DIM1	P41819	318 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	MEP2	P41948	499 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	MET12	P46151	657 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	ERP6	P53198	216 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	IRC15	Q02733	499 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	ATP25	Q03153	612 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	MMT1	Q03218	510 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	HMO1	Q03973	246 aa	Known RBP	13.66	□□□□□ -0.22
DEP1	YAL013W	ATG29	Q12092	213 aa		13.66	□□□□□ -0.22
DEP1	YAL013W	RAP1	P11938	827 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	SCL1	P21243	252 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	ATP7	P30902	174 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	DEF1	P35732	738 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	YCR087C-A	P37263	153 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	BAT1	P38891	393 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	ART5	P53244	586 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	CAF120	P53836	1060 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	IDP3	P53982	420 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	EFR3	Q03653	782 aa	Known RBP	13.65	□□□□□ -0.22
DEP1	YAL013W	RGT2	Q12300	763 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	SRN2	Q99176	213 aa		13.65	□□□□□ -0.22
DEP1	YAL013W	FUN30	P31380	1131 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	TCD2	P36101	447 aa	Known RBP	13.64	□□□□□ -0.23
DEP1	YAL013W	MRPL17	P36528	281 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	COS12	P53053	380 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	HFD1	Q04458	532 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	EAF1	Q06337	982 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	MUM3	Q08750	479 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	SUL2	Q12325	893 aa		13.64	□□□□□ -0.23
DEP1	YAL013W	HRP1	Q99383	534 aa	Known RBP	13.64	□□□□□ -0.23
DEP1	YAL013W	TOP3	P13099	656 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	UGA1	P17649	471 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	13.63	□□□□□ -0.23	RIP-Chip

Retrieved 100 of 5,963 RNA–protein pairs in 32.2 ms