RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	PC	P11498	1178 aa	Known RBP	10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	TRIM60	Q495X7	471 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	SLC39A5	Q6ZMH5	540 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	ARMCX2	Q7L311	632 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	RNF180	Q86T96	592 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	CCDC144CP	Q8IYA2	1237 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	PURB	Q96QR8	312 aa	Known RBP	10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	GDF15	Q99988	308 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	UBE2O	Q9C0C9	1292 aa	Known RBP	10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	CPVL	Q9H3G5	476 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	PRKAG2	Q9UGJ0	569 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	NRBP1	Q9UHY1	535 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	MYADML2	A6NDP7	307 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	SOWAHB	A6NEL2	793 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	GOLGA8CP	A6NN73	597 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	SOX1	O00570	391 aa	Predicted RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	ADCY6	O43306	1168 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	PLA2G6	O60733	806 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	C6orf222	P0C671	652 aa	Predicted RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	NOV	P48745	357 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	ZNF543	Q08ER8	600 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	ACVR2B	Q13705	512 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	CCDC144B	Q3MJ40	725 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	MAMDC4	Q6UXC1	1216 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	NOL8	Q76FK4	1167 aa	Known RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	EEPD1	Q7L9B9	569 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	IQCA1	Q86XH1	822 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	MSL3	Q8N5Y2	521 aa	Known RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	FAM133A	Q8N9E0	248 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	DSCC1	Q9BVC3	393 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	RANBP17	Q9H2T7	1088 aa	Known RBP	10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	TCP11L1	Q9NUJ3	509 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	FAM184B	Q9ULE4	1060 aa		10.18	□□□□□ -0.78
RFX3-209	ENST00000451859	ASTN1	O14525	1302 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	TNKS	O95271	1327 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859		A0A1W2PQ45	241 aa	Predicted RBP	10.17	□□□□□ -0.78
RFX3-209	ENST00000451859		A0A1W2PQY0	241 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	PTPDC1	A2A3K4	754 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	NFIB	O00712	420 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	DHX16	O60231	1041 aa	Known RBP	10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	ADAMTS4	O75173	837 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	ICAM1	P05362	532 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	PTGS1	P23219	599 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	TKFC	Q3LXA3	575 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	USH1G	Q495M9	461 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	FBXO16	Q8IX29	292 aa	Predicted RBP	10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	PNMA1	Q8ND90	353 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	LRCH3	Q96II8	777 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	UBAC1	Q9BSL1	405 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	ADAM33	Q9BZ11	813 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	UBA5	Q9GZZ9	404 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	ABHD16B	Q9H3Z7	469 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	KAT14	Q9H8E8	782 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	CYP39A1	Q9NYL5	469 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	CTNNA3	Q9UI47	895 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	PHF24	Q9UPV7	400 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	GBF1	Q92538	1859 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	DOCK5	Q9H7D0	1870 aa		10.17	□□□□□ -0.78
RFX3-209	ENST00000451859	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859		A0A1W2PPC1	479 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	PQBP1	O60828	265 aa	Known RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	DUSP11	O75319	330 aa	Known RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	CALML3	P27482	149 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	ACLY	P53396	1101 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	PTH1R	Q03431	593 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	TLE2	Q04725	743 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	BAAT	Q14032	418 aa	Predicted RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	BTNL9	Q6UXG8	535 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	SLC30A10	Q6XR72	485 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	SH3RF1	Q7Z6J0	888 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	TDH	Q8IZJ6	230 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	ENAH	Q8N8S7	591 aa	Predicted RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	RUFY2	Q8WXA3	655 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	VTI1A	Q96AJ9	217 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	TTC14	Q96N46	770 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	PDLIM7	Q9NR12	457 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	ZSWIM5	Q9P217	1185 aa		10.16	□□□□□ -0.78
RFX3-209	ENST00000451859	TRIP12	Q14669	1992 aa	Predicted RBP	10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	RAD50	Q92878	1312 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	ASB14	A6NK59	587 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	CHML	P26374	656 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	BMP8B	P34820	402 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	BEX3	Q00994	111 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	KCNA10	Q16322	511 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	SKAP1	Q86WV1	359 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	DGKH	Q86XP1	1220 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	HS6ST3	Q8IZP7	471 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	KRT23	Q9C075	422 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	KATNBL1	Q9H079	304 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	CNNM2	Q9H8M5	875 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	SPC25	Q9HBM1	224 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	VAT1L	Q9HCJ6	419 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	STARD7	Q9NQZ5	370 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	PDGFC	Q9NRA1	345 aa		10.15	□□□□□ -0.78
RFX3-209	ENST00000451859	SCN5A	Q14524	2016 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	MYO9B	Q13459	2157 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	PARP1	P09874	1014 aa	Known RBP	10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms