RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	CDC24	P11433	854 aa	Predicted RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	SNA3	P14359	133 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	EXO70	P19658	623 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	VPS33	P20795	691 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	RPL5	P26321	297 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	URA7	P28274	579 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	MRPL7	P36519	292 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	YLF2	P38746	405 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SHC1	P39000	512 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	FRT2	P39734	528 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	HMF1	P40037	129 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	TMA108	P40462	946 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
EAR1	YMR171C	FMP33	P46998	180 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	NMA2	P53204	395 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	RTT102	P53330	157 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	PXR1	P53335	271 aa	Predicted RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	SNF12	P53628	566 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	TRM44	Q02648	567 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	FMN1	Q03778	218 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SPH1	Q06160	661 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	HBT1	Q07653	1046 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	TAF3	Q12297	353 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SAM1	P10659	382 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	SLY1	P22213	666 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SNT1	P25357	1226 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	RAD51	P25454	400 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	ETR1	P38071	380 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	APM3	P38153	483 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	YJL193W	P39542	402 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	SCC4	P40090	624 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	PFK26	P40433	827 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	ASN1	P49089	572 aa	Known RBP	4.61	□□□□□ -1.67
EAR1	YMR171C	CTR1	P49573	406 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	USE1	P53146	245 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	ACS1	Q01574	713 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	ACL4	Q03771	387 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	THI7	Q05998	598 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	BCP1	Q06338	283 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	ATG17	Q06410	417 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	RKI1	Q12189	258 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	GPM3	Q12326	303 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	GIS3	Q12418	502 aa		4.61	□□□□□ -1.67
EAR1	YMR171C	BI2	P03873	423 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	RAD10	P06838	210 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	SEC12	P11655	471 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	PHO81	P17442	1178 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	CDC42	P19073	191 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	TYR1	P20049	452 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	TRX1	P22217	103 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	VPH2	P32341	215 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	NUP120	P35729	1037 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	HES1	P35843	434 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	MCR1	P36060	302 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	CUE2	P36075	443 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	STV1	P37296	890 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	MOH1	P38191	138 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	RPT2	P40327	437 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	DIM1	P41819	318 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	VMA10	P48836	114 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	MIG2	P53035	382 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	MRM2	P53123	320 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	YGL039W	P53183	348 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	CUL3	P53202	744 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	BIO4	P53630	237 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	RCF2	P53721	224 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	TIM44	Q01852	431 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	EFR3	Q03653	782 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	ADE13	Q05911	482 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	KAP95	Q06142	861 aa	Known RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	IES4	Q08561	116 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	RRP36	Q12481	300 aa	Predicted RBP	4.6	□□□□□ -1.67
EAR1	YMR171C	BI3	Q9ZZW7	517 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	ECM29	P38737	1868 aa		4.6	□□□□□ -1.67
EAR1	YMR171C	CBP1	P07252	654 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	SEC1	P30619	724 aa	Known RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	PEX2	P32800	271 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	OAR1	P35731	278 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	DHR2	P36009	735 aa	Predicted RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	APL3	P38065	1025 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	STB5	P38699	743 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	STN1	P38960	494 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	YJL206C	P39529	758 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	DPH1	P40487	425 aa	Known RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	MKT1	P40850	830 aa	Known RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	CCT7	P42943	550 aa	Known RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	SNZ3	P43545	298 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	FAR3	P46671	204 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	ORC5	P50874	479 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	SNZ2	P53824	298 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	RPM2	Q02773	1202 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	YET3	Q07451	203 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	AAD4	Q07747	329 aa		4.59	□□□□□ -1.67
EAR1	YMR171C	NOT5	Q12514	560 aa	Predicted RBP	4.59	□□□□□ -1.67
EAR1	YMR171C	IMA3	P0CW40	589 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	IMA4	P0CW41	589 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	GPA2	P10823	449 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	HPR1	P17629	752 aa	Known RBP	4.58	□□□□□ -1.68
EAR1	YMR171C	URA4	P20051	364 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	RRT12	P25381	491 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 31.4 ms