RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	UME1	Q03010	460 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	TAF12	Q03761	539 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	RAD33	Q04231	177 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	BCH1	Q05029	724 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	ARO10	Q06408	635 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	YPR078C	Q06813	372 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	IMA2	Q08295	589 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	SKI7	Q08491	747 aa	Predicted RBP	4.55	□□□□□ -1.68
TFB3	YDR460W	THI21	Q08975	551 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	HMS1	Q12398	434 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	SET6	Q12529	373 aa		4.55	□□□□□ -1.68
TFB3	YDR460W	RPN13	O13563	156 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	BI4	P03879	638 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	CAN1	P04817	590 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	ILV2	P07342	687 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	GPA2	P10823	449 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	HOM2	P13663	365 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	FBA1	P14540	359 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	PTC6	P25646	442 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	PEX3	P28795	441 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	SPT14	P32363	452 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	ASF2	P32448	525 aa	Predicted RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	CDC12	P32468	407 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	PTM1	P32857	523 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	AIM26	P32858	118 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	PEX6	P33760	1030 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	NUP133	P36161	1157 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	YBR032W	P38223	100 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	PEX32	P38292	413 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	MNN9	P39107	395 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	EXO1	P39875	702 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	YTA12	P40341	825 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	NUP82	P40368	713 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	UBP7	P40453	1071 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	VMA13	P41807	478 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	CCT7	P42943	550 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	SAD1	P43589	448 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	MAD3	P47074	515 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	AIM24	P47127	394 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	ASE1	P50275	885 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	GET1	P53192	235 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	TWF1	P53250	332 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	PBP1	P53297	722 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	SLI1	P53304	468 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	RCF2	P53721	224 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	MNT4	P53745	580 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	BSC5	P53755	489 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	TEP1	P53916	434 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	SEG1	Q04279	960 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	COQ9	Q05779	260 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	CDA1	Q06702	301 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	COS7	Q07788	383 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	GSH2	Q08220	491 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	YNG1	Q08465	219 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	THP3	Q12049	470 aa	Known RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	SMF3	Q12078	473 aa	Predicted RBP	4.54	□□□□□ -1.68
TFB3	YDR460W	YPR063C	Q12160	140 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	YOL107W	Q12239	342 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	DCN1	Q12395	269 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	RAD61	Q99359	647 aa		4.54	□□□□□ -1.68
TFB3	YDR460W	YMR084W	A2P2R3	262 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	GAL10	P04397	699 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	GLN4	P13188	809 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	OM45	P16547	393 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	SEC1	P30619	724 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	ATP7	P30902	174 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	NDC1	P32500	655 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	RAD24	P32641	659 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	TFB1	P32776	642 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	TYE7	P33122	291 aa	Predicted RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	DIA4	P38705	446 aa	Predicted RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	SBE22	P38814	852 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	APE4	P38821	490 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	CRG1	P38892	291 aa	RIP-Chip data	4.53	□□□□□ -1.68	not detected
TFB3	YDR460W	MAM33	P40513	266 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	ARC1	P46672	376 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	AIP1	P46680	615 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	RPE1	P46969	238 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	YJR141W	P47172	347 aa	Predicted RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	TOM22	P49334	152 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	UBC12	P52491	188 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	USE1	P53146	245 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	DRN1	P53255	507 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	RNH70	P53331	553 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	CAF40	P53829	373 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	MPS1	P54199	764 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	SDH1	Q00711	640 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	ACS1	Q01574	713 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	CWC27	Q02770	301 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	SVL3	Q03088	825 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	SMP3	Q04174	516 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	CRF1	Q04930	467 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	FAR10	Q06001	478 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	NDE2	Q07500	545 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	YDL124W	Q07551	312 aa	Known RBP	4.53	□□□□□ -1.68
TFB3	YDR460W	MUM3	Q08750	479 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	MCH5	Q08777	521 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
TFB3	YDR460W	TY3A-G	Q12173	290 aa		4.53	□□□□□ -1.68
TFB3	YDR460W	YLL058W	Q12198	575 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms