RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	TEP1	P53916	434 aa		4.66	□□□□□ -1.66
SPT3	YDR392W	RPL15B	P54780	204 aa	Predicted RBP	4.66	□□□□□ -1.66
SPT3	YDR392W	TIM10	P87108	93 aa		4.66	□□□□□ -1.66
SPT3	YDR392W	TEN1	Q07921	160 aa		4.66	□□□□□ -1.66
SPT3	YDR392W	AFT2	Q08957	416 aa		4.66	□□□□□ -1.66
SPT3	YDR392W	DBF2	P22204	572 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	VBA3	P25594	458 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	PFA3	P42836	336 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	YAP1802	P53309	568 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	YNL144C	P53907	740 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	DOS2	P54858	310 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	TRM8	Q12009	286 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	PEX11	Q12462	236 aa		4.65	□□□□□ -1.67
SPT3	YDR392W	MTF2	P10849	440 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	RNR1	P21524	888 aa	Known RBP	4.64	□□□□□ -1.67
SPT3	YDR392W	PEP3	P27801	918 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	CAB3	P36076	571 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	YBR259W	P38338	688 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	BCD1	P38772	366 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	SPT8	P38915	602 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	NUP82	P40368	713 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	TEL2	P53038	688 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	APM1	Q00776	475 aa	Predicted RBP	4.64	□□□□□ -1.67
SPT3	YDR392W	ENT4	Q07872	247 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	TGL5	Q12043	749 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	DIN7	Q12086	430 aa		4.64	□□□□□ -1.67
SPT3	YDR392W	SST2	P11972	698 aa	Known RBP	4.63	□□□□□ -1.67
SPT3	YDR392W	TOP3	P13099	656 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	MDM10	P18409	493 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	ADY2	P25613	283 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	GSY2	P27472	705 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	FLO10	P36170	1169 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	MRPL37	P36532	105 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	YHR033W	P38690	423 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	HOS4	P40480	1083 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	YFR018C	P43599	363 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	UBC11	P52492	156 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	YGL108C	P53139	140 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	SMX3	P54999	86 aa	Predicted RBP	4.63	□□□□□ -1.67
SPT3	YDR392W	CIR2	Q08822	631 aa		4.63	□□□□□ -1.67
SPT3	YDR392W	SUI2	P20459	304 aa	Known RBP	4.62	□□□□□ -1.67
SPT3	YDR392W	GID7	P25569	745 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	ARE1	P25628	610 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	MRS6	P32864	603 aa	Known RBP	4.62	□□□□□ -1.67
SPT3	YDR392W	SRP72	P38688	640 aa	Known RBP	4.62	□□□□□ -1.67
SPT3	YDR392W	SPC97	P38863	823 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	REV7	P38927	245 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	CBK1	P53894	756 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	NAN1	Q02931	896 aa	Known RBP	4.62	□□□□□ -1.67
SPT3	YDR392W	AIM32	Q04689	311 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	YPR114W	Q06107	315 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	THI21	Q08975	551 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	GEP5	Q12393	293 aa		4.62	□□□□□ -1.67
SPT3	YDR392W	TSR4	P25040	408 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	MUD1	P32605	298 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	MTC4	P38335	694 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	SIC1	P38634	284 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	LRP1	P38801	184 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	YDR089W	P38966	869 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	MKT1	P40850	830 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	BAP3	P41815	604 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	CUP9	P41817	306 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	UBP6	P43593	499 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	SPC105	P53148	917 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	YGR283C	P53336	341 aa	Predicted RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	LRS4	Q04087	347 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	ASM4	Q05166	528 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	LEU9	Q12166	604 aa	Known RBP	4.61	□□□□□ -1.67
SPT3	YDR392W	TAF3	Q12297	353 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	ICT1	Q12385	394 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	CEX1	Q12453	761 aa		4.61	□□□□□ -1.67
SPT3	YDR392W	RPN13	O13563	156 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	AMD1	P15274	810 aa	Known RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	MAK32	P23060	363 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	YCL002C	P25565	263 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	RDS1	P25611	832 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	NTR2	P36118	322 aa	Predicted RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	MMS21	P38632	267 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	TDA11	P38854	504 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	SET5	P38890	526 aa	Known RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	MTR3	P48240	250 aa	Predicted RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	SWC4	P53201	476 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	ESF2	P53743	316 aa	Known RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	YDR514C	Q04408	483 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	THI7	Q05998	598 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	ABP140	Q08641	628 aa	Known RBP	4.6	□□□□□ -1.67
SPT3	YDR392W	PFA4	Q12006	378 aa		4.6	□□□□□ -1.67
SPT3	YDR392W	PHO8	P11491	566 aa		4.59	□□□□□ -1.67
SPT3	YDR392W	HSP60	P19882	572 aa	Known RBP	4.59	□□□□□ -1.67
SPT3	YDR392W	MRC1	P25588	1096 aa		4.59	□□□□□ -1.67
SPT3	YDR392W	YIH1	P25637	258 aa		4.59	□□□□□ -1.67
SPT3	YDR392W	HIR1	P32479	840 aa		4.59	□□□□□ -1.67
SPT3	YDR392W	NOP4	P37838	685 aa	Known RBP	4.59	□□□□□ -1.67
SPT3	YDR392W	GIS3	Q12418	502 aa		4.59	□□□□□ -1.67
SPT3	YDR392W	TPM1	P17536	199 aa	Known RBP	4.58	□□□□□ -1.68
SPT3	YDR392W	RRT12	P25381	491 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	ECM1	P39715	212 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	JEM1	P40358	645 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	NDC80	P40460	691 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	LCL3	P53153	274 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms