RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 RRAGAQ7L523 313 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 FMNL3Q8IVF7 1028 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 ACRBPQ8NEB7 543 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 TRIM58Q8NG06 486 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 TUBGCP2Q9BSJ2 902 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 PSTPIP2Q9H939 334 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 ARHGEF10LQ9HCE6 1279 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SLC39A2Q9NP94 309 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 FAM207AQ9NSI2 230 aaPredicted RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 ANAPC4Q9UJX5 808 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 CETN3O15182 167 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 CLCN6P51797 869 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 MCTP2Q6DN12 878 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 GPBP1Q86WP2 473 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 C2CD5Q86YS7 1000 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 C10orf67Q8IYJ2 551 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 MB21D1Q8N884 522 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 RETREG2Q8NC44 543 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 FAM76AQ8TAV0 307 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 ANKRD7Q92527 254 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 LARP4BQ92615 738 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 DPF2Q92785 391 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 TEKT1Q969V4 418 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 RASAL2Q9UJF2 1139 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 DNM3Q9UQ16 869 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PLCG1P19174 1290 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 FGFR2P21802 821 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 HOXA7P31268 230 aaPredicted RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 CDK8P49336 464 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 C8orf74Q6P047 294 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 ILDR1Q86SU0 546 aaPredicted RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 NELFCDQ8IXH7 590 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 TBCKQ8TEA7 893 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 FRMD4BQ9Y2L6 1034 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 TTLL1O95922 423 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PRDX5P30044 214 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 SARNPP82979 210 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 PPP4R3AQ6IN85 833 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 POTEDQ86YR6 584 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 CCDC50Q8IVM0 306 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 OTUD6BQ8N6M0 293 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 NSUN4Q96CB9 384 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 TAOK3Q9H2K8 898 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 STK17AQ9UEE5 414 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PHRF1Q9P1Y6 1649 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 CTIFO43310 598 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 PDE6BP35913 854 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 USH1GQ495M9 461 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 INTS5Q6P9B9 1019 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 TMC4Q7Z404 712 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PAIP2Q9BPZ3 127 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 NSRP1Q9H0G5 558 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 ATRNO75882 1429 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 C5P01031 1676 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 MAGEA1P43355 309 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 DPYDQ12882 1025 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PTPAQ15257 358 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 SF3B3Q15393 1217 aaKnown RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 DIXDC1Q155Q3 683 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 HERC4Q5GLZ8 1057 aaPredicted RBP6.41□□□□□ -1.38
VPS50-220ENST00000544910 HS2ST1Q7LGA3 356 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PLCD3Q8N3E9 789 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 IFT81Q8WYA0 676 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 SH2D4AQ9H788 454 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PCDHA6Q9UN73 950 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 PCDHA8Q9Y5H6 950 aa6.41□□□□□ -1.38
VPS50-220ENST00000544910 CHMP2AO43633 222 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 ACTN4O43707 911 aaKnown RBP6.4□□□□□ -1.38
VPS50-220ENST00000544910 CASP1P29466 404 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 FMR1Q06787 632 aaKnown RBP eCLIP6.4□□□□□ -1.384e-6■■■■□ 21.6
VPS50-220ENST00000544910 MSL1Q68DK7 614 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 IFT20Q8IY31 132 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 SRBD1Q8N5C6 995 aaKnown RBP6.4□□□□□ -1.38
VPS50-220ENST00000544910 ABHD10Q9NUJ1 306 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 SPEF2Q9C093 1822 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 USP54Q70EL1 1684 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 ANKRD62A6NC57 917 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 PHACTR2O75167 634 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 SERPINB2P05120 415 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 TCP10Q12799 353 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 E4F1Q66K89 784 aaPredicted RBP6.4□□□□□ -1.38
VPS50-220ENST00000544910 CCDC121Q6ZUS5 278 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 B4GALNT4Q76KP1 1039 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 LRP10Q7Z4F1 713 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 LINC00116Q8NCU8 138 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 GPR101Q96P66 508 aaPredicted RBP6.4□□□□□ -1.38
VPS50-220ENST00000544910 HYOU1Q9Y4L1 999 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 TNS2Q63HR2 1409 aa6.4□□□□□ -1.38
VPS50-220ENST00000544910 BCL9O00512 1426 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 IBSPP21815 317 aaPredicted RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 SBK1Q52WX2 424 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 C6orf163Q5TEZ5 329 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 MYCBPQ99417 103 aaPredicted RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 MRPL44Q9H9J2 332 aaKnown RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 NHEJ1Q9H9Q4 299 aaPredicted RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 VEZTQ9HBM0 779 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 LAMB4A4D0S4 1761 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 A0A1B0GTH6 734 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 BBOX1O75936 387 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 CCNE1P24864 410 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms