RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	TAF6L	Q9Y6J9	622 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	NFIB	O00712	420 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	SLC27A2	O14975	620 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	CENPB	P07199	599 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	NECTIN1	Q15223	517 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	LRRC41	Q15345	812 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	CDC37	Q16543	378 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	TMEM67	Q5HYA8	995 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	GJC2	Q5T442	439 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	ANO1	Q5XXA6	986 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	CREB3L3	Q68CJ9	461 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	RNF180	Q86T96	592 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	CCDC144CP	Q8IYA2	1237 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	CLEC4D	Q8WXI8	215 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	ABCB11	O95342	1321 aa		13.78	□□□□□ -0.2
SYNE1-238	ENST00000540663	PALM3	A6NDB9	673 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	KLRF2	D3W0D1	207 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	DHX16	O60231	1041 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	DUSP11	O75319	330 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	MCM5	P33992	734 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	ANTXR2	P58335	489 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	TRAF1	Q13077	416 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	BAAT	Q14032	418 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	GRM4	Q14833	912 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	CATIP	Q7Z7H3	387 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	C7orf61	Q8IZ16	206 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	TMTC2	Q8N394	836 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	IGDCC4	Q8TDY8	1250 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	MORC4	Q8TE76	937 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	ALPK3	Q96L96	1907 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	MPHOSPH6	Q99547	160 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	MAP3K14	Q99558	947 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	TSEN34	Q9BSV6	310 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	JMJD4	Q9H9V9	463 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	MAD2L2	Q9UI95	211 aa		13.77	□□□□□ -0.21
SYNE1-238	ENST00000540663	ASTN1	O14525	1302 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	PTPDC1	A2A3K4	754 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663		B4DLN1	442 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	PRC1	O43663	620 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	MRPL12	P52815	198 aa	Known RBP	13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	TROAP	Q12815	778 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	LRRC26	Q2I0M4	334 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	QRICH1	Q2TAL8	776 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	CCDC144B	Q3MJ40	725 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	RNF207	Q6ZRF8	634 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	FBXO11	Q86XK2	927 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	MCF2L2	Q86YR7	1114 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	DNER	Q8NFT8	737 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	MTMR8	Q96EF0	704 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	TMEM87B	Q96K49	555 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	KATNBL1	Q9H079	304 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	CPVL	Q9H3G5	476 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	SPC25	Q9HBM1	224 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	VTA1	Q9NP79	307 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	PHF24	Q9UPV7	400 aa		13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	MRPL11	Q9Y3B7	192 aa	Known RBP	13.76	□□□□□ -0.21
SYNE1-238	ENST00000540663	SMCHD1	A6NHR9	2005 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	SYNRG	Q9UMZ2	1314 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	ADAMTS4	O75173	837 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	DDAH1	O94760	285 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	PGK1	P00558	417 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	MYCN	P04198	464 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	CST5	P28325	142 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	ALDH5A1	P51649	535 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	USH1G	Q495M9	461 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	CHST3	Q7LGC8	479 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	STAG2	Q8N3U4	1231 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	AMN	Q9BXJ7	453 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	UPF3A	Q9H1J1	476 aa	Known RBP	13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	LY9	Q9HBG7	655 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	PPP4R2	Q9NY27	417 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	LRRC37A2	A6NM11	1700 aa		13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	RANBP2	P49792	3224 aa	Known RBP	13.75	□□□□□ -0.21
SYNE1-238	ENST00000540663	MCM3AP	O60318	1980 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	LCT	P09848	1927 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	MOXD2P	A6NHM9	499 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	ZBTB5	O15062	677 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	CALML3	P27482	149 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	KIF5B	P33176	963 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	ADCYAP1R1	P41586	468 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	LIFR	P42702	1097 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	GJA9	P57773	515 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	RPS6	P62753	249 aa	Known RBP	13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	NKX3-2	P78367	333 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	TNFAIP2	Q03169	654 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	KRT32	Q14532	448 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	SNX17	Q15036	470 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	TSGA10IP	Q3SY00	556 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	HABP4	Q5JVS0	413 aa	Known RBP	13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	C1orf53	Q5VUE5	145 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	IQSEC1	Q6DN90	963 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	SLC30A10	Q6XR72	485 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	ZNF654	Q8IZM8	581 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	SAMD3	Q8N6K7	520 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	KLHDC9	Q8NEP7	349 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	RIOX1	Q9H6W3	641 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	SENP2	Q9HC62	589 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	VAT1L	Q9HCJ6	419 aa		13.74	□□□□□ -0.21
SYNE1-238	ENST00000540663	SH2B2	O14492	632 aa	Predicted RBP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms