RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 PGAP2Q9UHJ9 254 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 GTPBP6O43824 516 aaPredicted RBP20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 AFMP43652 599 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ZNF280AP59817 542 aaPredicted RBP20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MAP3K10Q02779 954 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CDC37Q16543 378 aaPredicted RBP20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 KCNF1Q9H3M0 494 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 VEZTQ9HBM0 779 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ARHGEF10LQ9HCE6 1279 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 DICER1Q9UPY3 1922 aaKnown RBP20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 WNT10BO00744 389 aa20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 BMP3P12645 472 aa20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ZNF830Q96NB3 372 aaPredicted RBP20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MYOZ2Q9NPC6 264 aa20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ZBTB21Q9ULJ3 1066 aa20.37■□□□□ 0.85
HLA-DQB1-201ENST00000374943 A0A1W2PRG0 241 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 PTGS1P23219 599 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ERCC5P28715 1186 aaPredicted RBP20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CCDC186Q7Z3E2 898 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 ENOX1Q8TC92 643 aaKnown RBP20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MTMR9Q96QG7 549 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 PSTPIP2Q9H939 334 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MAGEF1Q9HAY2 307 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 TMX2Q9Y320 296 aa20.36■□□□□ 0.85
HLA-DQB1-201ENST00000374943 EDIL3O43854 480 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MYL1P05976 194 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 UBA7P41226 1012 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 STAT6P42226 847 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 SYDE2Q5VT97 1194 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 PPP4R3AQ6IN85 833 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 NAP1L4Q99733 375 aaKnown RBP20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 TMEM39BQ9GZU3 492 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CUEDC2Q9H467 287 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 GOLGB1Q14789 3259 aaKnown RBP20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 RAD21O60216 631 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 KARSQ15046 597 aaKnown RBP20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 NAALADL2Q58DX5 795 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MCTP2Q6DN12 878 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 POTEDQ86YR6 584 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 IGSF22Q8N9C0 903 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 MTRQ99707 1265 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 FHDC1Q9C0D6 1143 aaPredicted RBP20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 PCDHA1Q9Y5I3 950 aa20.35■□□□□ 0.85
HLA-DQB1-201ENST00000374943 GCFC2P16383 781 aaKnown RBP20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 LMOD1P29536 600 aaPredicted RBP20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 TNNI2P48788 182 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 FXR2P51116 673 aaKnown RBP eCLIP20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 FANCCQ00597 558 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 SEMA3FQ13275 785 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 UBE2SQ16763 222 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 NBPF9Q3BBW0 867 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 RRAGBQ5VZM2 374 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 TEX2Q8IWB9 1127 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 AMNQ9BXJ7 453 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 NRBP1Q9UHY1 535 aa20.34■□□□□ 0.85
HLA-DQB1-201ENST00000374943 PP2D1A8MPX8 630 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CDC25AP30304 524 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CALCRLQ16602 461 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 CCDC144BQ3MJ40 725 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 NUP88Q99567 741 aaPredicted RBP20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 SYT17Q9BSW7 474 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 XPO4Q9C0E2 1151 aaKnown RBP20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 GOPCQ9HD26 462 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 RMND1Q9NWS8 449 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 IFNKQ9P0W0 207 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 IMPACTQ9P2X3 320 aa20.33■□□□□ 0.85
HLA-DQB1-201ENST00000374943 SMCHD1A6NHR9 2005 aa20.33■□□□□ 0.84
HLA-DQB1-201ENST00000374943 TMEM232C9JQI7 657 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 FMR1Q06787 632 aaKnown RBP eCLIP20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 AP3B2Q13367 1082 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CUL4BQ13620 913 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CABP7Q86V35 215 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 KBTBD4Q9NVX7 518 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CBFA2T2O43439 604 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 SLC37A4O43826 429 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 TDP2O95551 362 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 ATP1A3P13637 1013 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 ZNF18P17022 549 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CASP1P29466 404 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CAP2P40123 477 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 FBXO11Q86XK2 927 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 CDAN1Q8IWY9 1227 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 KIAA1524Q8TCG1 905 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 DPF2Q92785 391 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 SH2D4AQ9H788 454 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 FANCLQ9NW38 375 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 BCS1LQ9Y276 419 aa20.32■□□□□ 0.84
HLA-DQB1-201ENST00000374943 PLA2G6O60733 806 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 OFD1O75665 1012 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 ECE1P42892 770 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 TNFAIP1Q13829 316 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 PDIA5Q14554 519 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 TMEM266Q2M3C6 531 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 ZNF784Q8NCA9 323 aaPredicted RBP20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 ACER1Q8TDN7 264 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 SPTLC3Q9NUV7 552 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 DOCK1Q14185 1865 aa20.31■□□□□ 0.84
HLA-DQB1-201ENST00000374943 SHTN1A0MZ66 631 aa20.3■□□□□ 0.84
HLA-DQB1-201ENST00000374943 FZD9O00144 591 aa20.3■□□□□ 0.84
HLA-DQB1-201ENST00000374943 RPN1P04843 607 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms