RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	CAC2	Q04199	468 aa		5.07	□□□□□ -1.6
RRP40	YOL142W	SNA4	Q07549	140 aa		5.07	□□□□□ -1.6
RRP40	YOL142W	PET111	P08468	800 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	LHS1	P36016	881 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	AAP1	P37898	856 aa	Known RBP	5.06	□□□□□ -1.6
RRP40	YOL142W	MRX1	P40050	688 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	YIL152W	P40455	235 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	YIL089W	P40500	205 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	IST3	P40565	148 aa	Predicted RBP	5.06	□□□□□ -1.6
RRP40	YOL142W	SWP82	P43554	623 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	RIM20	Q12033	661 aa		5.06	□□□□□ -1.6
RRP40	YOL142W	CBP1	P07252	654 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	CHO1	P08456	276 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	RPL42A	P0CX27	106 aa	Known RBP	5.05	□□□□□ -1.6
RRP40	YOL142W	RPL42B	P0CX28	106 aa	Known RBP	5.05	□□□□□ -1.6
RRP40	YOL142W	OPI1	P21957	404 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	SRB5	P32585	307 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	MRS6	P32864	603 aa	Known RBP	5.05	□□□□□ -1.6
RRP40	YOL142W	TFC3	P34111	1160 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	BNA1	P47096	177 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	DSE3	Q08729	430 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	YLR112W	Q12130	139 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	TAH18	Q12181	623 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	CSR2	Q12734	1121 aa		5.05	□□□□□ -1.6
RRP40	YOL142W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.04	□□□□□ -1.6	not detected
RRP40	YOL142W	STE50	P25344	346 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	SOF1	P33750	489 aa	Known RBP	5.04	□□□□□ -1.6
RRP40	YOL142W	PSY4	P38193	441 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	KEL1	P38853	1164 aa	Known RBP	5.04	□□□□□ -1.6
RRP40	YOL142W	SEC31	P38968	1273 aa	Known RBP	5.04	□□□□□ -1.6
RRP40	YOL142W	ASI1	P54074	624 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	GTR1	Q00582	310 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	REG1	Q00816	1014 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	PFA5	Q03289	374 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	POS5	Q06892	414 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	PSR2	Q07949	397 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	MLH2	Q07980	695 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	SRL1	Q08673	210 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	TRM8	Q12009	286 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	ERG27	Q12452	347 aa	Known RBP	5.04	□□□□□ -1.6
RRP40	YOL142W	VCX1	Q99385	411 aa		5.04	□□□□□ -1.6
RRP40	YOL142W	MOT1	P32333	1867 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	COQ1	P18900	473 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	TEF4	P36008	412 aa	Known RBP	5.03	□□□□□ -1.6
RRP40	YOL142W	VPS24	P36095	224 aa	Known RBP	5.03	□□□□□ -1.6
RRP40	YOL142W	UME6	P39001	836 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	ECM10	P39987	644 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	PFK26	P40433	827 aa	Known RBP	5.03	□□□□□ -1.6
RRP40	YOL142W	CTK2	P46962	323 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	LSC1	P53598	329 aa	Known RBP	5.03	□□□□□ -1.6
RRP40	YOL142W	RSM28	Q03430	361 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	NUP53	Q03790	475 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	VMS1	Q04311	632 aa	Known RBP	5.03	□□□□□ -1.6
RRP40	YOL142W	TDA9	Q04545	1251 aa		5.03	□□□□□ -1.6
RRP40	YOL142W	SNF1	P06782	633 aa	Known RBP	5.02	□□□□□ -1.61
RRP40	YOL142W	ERG8	P24521	451 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	PWP2	P25635	923 aa	Known RBP	5.02	□□□□□ -1.61
RRP40	YOL142W	RTS1	P38903	757 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	SCS3	P53012	380 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	YNR061C	P53747	219 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	IZH1	Q03419	316 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	YMR034C	Q05131	434 aa	Predicted RBP	5.02	□□□□□ -1.61
RRP40	YOL142W	VID22	Q05934	901 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	BUD7	Q08754	746 aa		5.02	□□□□□ -1.61
RRP40	YOL142W	KEL3	Q08979	651 aa	Predicted RBP	5.02	□□□□□ -1.61
RRP40	YOL142W	YFL068W	P0CX99	160 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	YLL066W-A	P0CY00	160 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	YLL067W-A	P0CY01	160 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	TKL1	P23254	680 aa	Known RBP	5.01	□□□□□ -1.61
RRP40	YOL142W	YCR043C	P25361	127 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.01	□□□□□ -1.61	not detected
RRP40	YOL142W	ARC40	P38328	384 aa	Known RBP	5.01	□□□□□ -1.61
RRP40	YOL142W	PSD1	P39006	500 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	RTS3	P53289	263 aa		5.01	□□□□□ -1.61
RRP40	YOL142W	PRE8	P23639	250 aa		5	□□□□□ -1.61
RRP40	YOL142W	PRO3	P32263	286 aa	Known RBP	5	□□□□□ -1.61
RRP40	YOL142W	CNS1	P33313	385 aa		5	□□□□□ -1.61
RRP40	YOL142W	MYO3	P36006	1272 aa		5	□□□□□ -1.61
RRP40	YOL142W	MNN2	P38069	597 aa		5	□□□□□ -1.61
RRP40	YOL142W	PCL6	P40038	420 aa		5	□□□□□ -1.61
RRP40	YOL142W	RIC1	P40395	1056 aa		5	□□□□□ -1.61
RRP40	YOL142W	YGR021W	P53212	290 aa		5	□□□□□ -1.61
RRP40	YOL142W	ARP9	Q05123	467 aa		5	□□□□□ -1.61
RRP40	YOL142W	SKG3	Q06315	1026 aa		5	□□□□□ -1.61
RRP40	YOL142W	PSK2	Q08217	1101 aa		5	□□□□□ -1.61
RRP40	YOL142W	YOR019W	Q99248	730 aa		5	□□□□□ -1.61
RRP40	YOL142W	RAD61	Q99359	647 aa		5	□□□□□ -1.61
RRP40	YOL142W	TUS1	Q06412	1307 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	YLR302C	O13544	120 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	RAP1	P11938	827 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	FUI1	P38196	639 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	YBL028C	P38202	106 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	LEU5	P38702	357 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	TIF4631	P39935	952 aa	Known RBP	4.99	□□□□□ -1.61
RRP40	YOL142W	VID27	P40157	782 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	TES1	P41903	349 aa	Known RBP	4.99	□□□□□ -1.61
RRP40	YOL142W	YFR020W	P43600	232 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	ECI1	Q05871	280 aa		4.99	□□□□□ -1.61
RRP40	YOL142W	GPN2	Q08726	347 aa	Predicted RBP	4.99	□□□□□ -1.61
RRP40	YOL142W	YUR1	P26725	428 aa		4.98	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms