RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W CFT2Q12102 859 aaPredicted RBP3.49□□□□□ -1.85
UBP8YMR223W YLL056CQ12177 298 aa3.49□□□□□ -1.85
UBP8YMR223W PHO81P17442 1178 aa3.48□□□□□ -1.85
UBP8YMR223W CDC60P26637 1090 aaKnown RBP3.48□□□□□ -1.85
UBP8YMR223W MUD2P36084 527 aaKnown RBP3.48□□□□□ -1.85
UBP8YMR223W MRPL4P36517 319 aa3.48□□□□□ -1.85
UBP8YMR223W RRF1P38771 230 aa3.48□□□□□ -1.85
UBP8YMR223W SPG5P42933 373 aa3.48□□□□□ -1.85
UBP8YMR223W SMC3P47037 1230 aa3.48□□□□□ -1.85
UBP8YMR223W ASE1P50275 885 aa3.48□□□□□ -1.85
UBP8YMR223W CSL4P53859 292 aaPredicted RBP3.48□□□□□ -1.85
UBP8YMR223W MOT3P54785 490 aaKnown RBP3.48□□□□□ -1.85
UBP8YMR223W ADD37Q03233 198 aa3.48□□□□□ -1.85
UBP8YMR223W RRG1Q12167 365 aaPredicted RBP3.48□□□□□ -1.85
UBP8YMR223W ARP6Q12509 438 aa3.48□□□□□ -1.85
UBP8YMR223W HSH49Q99181 213 aaPredicted RBP3.48□□□□□ -1.85
UBP8YMR223W NCP1P16603 691 aaKnown RBP3.47□□□□□ -1.85
UBP8YMR223W GLK1P17709 500 aaKnown RBP3.47□□□□□ -1.85
UBP8YMR223W AAC3P18238 307 aa3.47□□□□□ -1.85
UBP8YMR223W SRB5P32585 307 aa3.47□□□□□ -1.85
UBP8YMR223W PXA2P34230 853 aa3.47□□□□□ -1.85
UBP8YMR223W YBR138CP38277 524 aa3.47□□□□□ -1.85
UBP8YMR223W NPR3P38742 1146 aa3.47□□□□□ -1.85
UBP8YMR223W LRP1P38801 184 aaKnown RBP3.47□□□□□ -1.85
UBP8YMR223W YTA12P40341 825 aa3.47□□□□□ -1.85
UBP8YMR223W YIL060WP40519 144 aa3.47□□□□□ -1.85
UBP8YMR223W YJL055WP47044 245 aa3.47□□□□□ -1.85
UBP8YMR223W UPF3P48412 387 aaKnown RBP3.47□□□□□ -1.85
UBP8YMR223W YKU80Q04437 629 aa3.47□□□□□ -1.85
UBP8YMR223W OPY2Q06810 360 aa3.47□□□□□ -1.85
UBP8YMR223W GDH1P07262 454 aaKnown RBP3.46□□□□□ -1.86
UBP8YMR223W CLB4P24871 460 aa3.46□□□□□ -1.86
UBP8YMR223W LDB16P25587 256 aa3.46□□□□□ -1.86
UBP8YMR223W RAD16P31244 790 aa3.46□□□□□ -1.86
UBP8YMR223W CAB3P36076 571 aa3.46□□□□□ -1.86
UBP8YMR223W PHD1P36093 366 aa3.46□□□□□ -1.86
UBP8YMR223W ERP1Q05359 219 aaKnown RBP3.46□□□□□ -1.86
UBP8YMR223W YOL159CQ08300 171 aa3.46□□□□□ -1.86
UBP8YMR223W CHD1P32657 1468 aa3.46□□□□□ -1.86
UBP8YMR223W RPL15AP05748 204 aaKnown RBP3.45□□□□□ -1.86
UBP8YMR223W MET8P15807 274 aa3.45□□□□□ -1.86
UBP8YMR223W YKL100CP34248 587 aa3.45□□□□□ -1.86
UBP8YMR223W YER130CP39959 443 aa3.45□□□□□ -1.86
UBP8YMR223W YEL068CP39977 110 aa3.45□□□□□ -1.86
UBP8YMR223W PUG1P40100 303 aa3.45□□□□□ -1.86
UBP8YMR223W PKP1P40530 394 aa3.45□□□□□ -1.86
UBP8YMR223W YJL213WP40896 331 aa3.45□□□□□ -1.86
UBP8YMR223W YFR020WP43600 232 aa3.45□□□□□ -1.86
UBP8YMR223W COS10P52924 374 aa3.45□□□□□ -1.86
UBP8YMR223W RBG2P53295 368 aaKnown RBP3.45□□□□□ -1.86
UBP8YMR223W YGR250CP53316 781 aaKnown RBP3.45□□□□□ -1.86
UBP8YMR223W TDA7P53882 636 aaPredicted RBP3.45□□□□□ -1.86
UBP8YMR223W BNI5P53890 448 aaKnown RBP3.45□□□□□ -1.86
UBP8YMR223W TIM10P87108 93 aa3.45□□□□□ -1.86
UBP8YMR223W YMR018WQ04364 514 aa3.45□□□□□ -1.86
UBP8YMR223W ATG26Q06321 1198 aa3.45□□□□□ -1.86
UBP8YMR223W YPR172WQ06608 200 aa3.45□□□□□ -1.86
UBP8YMR223W HIM1Q06674 414 aa3.45□□□□□ -1.86
UBP8YMR223W RIX7Q07844 837 aaKnown RBP3.45□□□□□ -1.86
UBP8YMR223W SMC6Q12749 1114 aa3.45□□□□□ -1.86
UBP8YMR223W FUR1P18562 216 aaKnown RBP3.44□□□□□ -1.86
UBP8YMR223W PGS1P25578 521 aa3.44□□□□□ -1.86
UBP8YMR223W MRPL36P36531 177 aa3.44□□□□□ -1.86
UBP8YMR223W IKS1P47042 667 aa3.44□□□□□ -1.86
UBP8YMR223W YML6P51998 286 aa3.44□□□□□ -1.86
UBP8YMR223W SOL4P53315 255 aa3.44□□□□□ -1.86
UBP8YMR223W MRPL19P53875 158 aa3.44□□□□□ -1.86
UBP8YMR223W MSS11Q03825 758 aa3.44□□□□□ -1.86
UBP8YMR223W TAF11Q04226 346 aa3.44□□□□□ -1.86
UBP8YMR223W YLR287CQ05881 355 aa3.44□□□□□ -1.86
UBP8YMR223W SCM3Q12334 223 aa3.44□□□□□ -1.86
UBP8YMR223W MRP7P12687 371 aa3.44□□□□□ -1.86
UBP8YMR223W RPC53P25441 422 aa3.44□□□□□ -1.86
UBP8YMR223W POL4P25615 582 aa3.44□□□□□ -1.86
UBP8YMR223W CDC15P27636 974 aa3.44□□□□□ -1.86
UBP8YMR223W ACH1P32316 526 aa3.44□□□□□ -1.86
UBP8YMR223W PSY4P38193 441 aa3.44□□□□□ -1.86
UBP8YMR223W SRP72P38688 640 aaKnown RBP3.44□□□□□ -1.86
UBP8YMR223W MDE1P47095 244 aa3.44□□□□□ -1.86
UBP8YMR223W CTF18P49956 741 aa3.44□□□□□ -1.86
UBP8YMR223W YGL082WP53155 381 aa3.44□□□□□ -1.86
UBP8YMR223W PKP2P53170 491 aa3.44□□□□□ -1.86
UBP8YMR223W HOT1Q03213 719 aa3.44□□□□□ -1.86
UBP8YMR223W SYF1Q04048 859 aaPredicted RBP3.44□□□□□ -1.86
UBP8YMR223W BSC6Q08280 497 aa3.44□□□□□ -1.86
UBP8YMR223W APC5Q08683 685 aa3.44□□□□□ -1.86
UBP8YMR223W RRP36Q12481 300 aaPredicted RBP3.44□□□□□ -1.86
UBP8YMR223W NOP58Q12499 511 aaKnown RBP3.44□□□□□ -1.86
UBP8YMR223W ENT1Q12518 454 aa3.44□□□□□ -1.86
UBP8YMR223W RER1P25560 188 aa3.43□□□□□ -1.86
UBP8YMR223W CMK1P27466 446 aaKnown RBP3.43□□□□□ -1.86
UBP8YMR223W MCM4P30665 933 aaKnown RBP3.43□□□□□ -1.86
UBP8YMR223W RRT2P38332 387 aa3.43□□□□□ -1.86
UBP8YMR223W NOP16P40007 231 aaKnown RBP3.43□□□□□ -1.86
UBP8YMR223W JEM1P40358 645 aa3.43□□□□□ -1.86
UBP8YMR223W DPH1P40487 425 aaKnown RBP3.43□□□□□ -1.86
UBP8YMR223W RTT101P47050 842 aa3.43□□□□□ -1.86
UBP8YMR223W NNF2P53253 936 aa3.43□□□□□ -1.86
UBP8YMR223W ALF1P53904 254 aa3.43□□□□□ -1.86
UBP8YMR223W NCS2P53923 493 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms