RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	SEC9	P40357	651 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	IME4	P41833	600 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	BIT61	P47041	543 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	PET130	P47065	347 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	DCP2	P53550	970 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	REC102	Q02721	264 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	ECM18	Q04623	453 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	AIM41	Q12032	185 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	VPS54	Q12071	889 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	LEU9	Q12166	604 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	YDR061W	Q12298	539 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	LPD1	P09624	499 aa	Known RBP	4.91	□□□□□ -1.62
ROT1	YMR200W	TUB1	P09733	447 aa	Known RBP	4.91	□□□□□ -1.62
ROT1	YMR200W	CLC1	P17891	233 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	YIH1	P25637	258 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	NTH1	P32356	751 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	THI2	P38141	450 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	EHT1	P38295	451 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	CCT6	P39079	546 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	LRO1	P40345	661 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	LIA1	P47120	325 aa	Known RBP	4.91	□□□□□ -1.62
ROT1	YMR200W	RAD17	P48581	401 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	CTR1	P49573	406 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	TWF1	P53250	332 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	BUD22	Q04347	519 aa	Known RBP	4.91	□□□□□ -1.62
ROT1	YMR200W	ARO10	Q06408	635 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	AVL9	Q12500	764 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	YML133C	Q03099	1374 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	YLL067C	Q07888	1374 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	YLL066C	Q99208	1374 aa		4.91	□□□□□ -1.62
ROT1	YMR200W	TAL1	P15019	335 aa	Known RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	TUP1	P16649	713 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	RPB4	P20433	221 aa	Predicted RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	CRM1	P30822	1084 aa	Known RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	YKT6	P36015	200 aa	Known RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	SLM4	P38247	162 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	CRG1	P38892	291 aa	RIP-Chip data	4.9	□□□□□ -1.63	not detected
ROT1	YMR200W	BDH2	P39713	417 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	YER034W	P40022	185 aa	Known RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	FTR1	P40088	404 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	HXT14	P42833	540 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	VID30	P53076	958 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	YGL036W	P53185	909 aa	Predicted RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	MTG1	Q03151	367 aa	Predicted RBP	4.9	□□□□□ -1.63
ROT1	YMR200W	INP2	Q03824	705 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	VTA1	Q06263	330 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	YLR413W	Q06689	675 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	UAF30	Q08747	228 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	ECM3	Q99252	613 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	YLR278C	Q05854	1341 aa		4.9	□□□□□ -1.63
ROT1	YMR200W	YBR085C-A	O43137	85 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	KIN82	P25341	720 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	BUD14	P27637	709 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	YJU2	P28320	278 aa	Predicted RBP	4.89	□□□□□ -1.63
ROT1	YMR200W	AFG1	P32317	509 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	HMX1	P32339	317 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	SMY1	P32364	656 aa	Known RBP	4.89	□□□□□ -1.63
ROT1	YMR200W	YME2	P32843	850 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	ARC19	P33204	171 aa	Known RBP	4.89	□□□□□ -1.63
ROT1	YMR200W	PEX18	P38855	283 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	ALD5	P40047	520 aa	Known RBP	4.89	□□□□□ -1.63
ROT1	YMR200W	YTA12	P40341	825 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	ARG2	P40360	574 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	ASG1	P40467	964 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	IDS2	P46958	469 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	CTK2	P46962	323 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	IMO32	P53219	342 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	RRP46	P53256	223 aa	Predicted RBP	4.89	□□□□□ -1.63
ROT1	YMR200W	YNL144C	P53907	740 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	SMA1	Q02651	245 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	MSC3	Q05812	728 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	USV1	Q12132	391 aa		4.89	□□□□□ -1.63
ROT1	YMR200W	TDH1	P00360	332 aa	Known RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	HIP1	P06775	603 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	ARD1	P07347	238 aa	Predicted RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	PRP2	P20095	876 aa	Predicted RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	SEC15	P22224	910 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	DPH5	P32469	300 aa	Predicted RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	HCS1	P34243	683 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	GLG1	P36143	616 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	AGP2	P38090	596 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	AIM10	P39965	576 aa	Known RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	SEC24	P40482	926 aa	Known RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	APT1	P49435	187 aa	Known RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	ATG4	P53867	494 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	YNL143C	P53908	130 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	RBS1	Q05672	457 aa	Known RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	MDM36	Q06820	579 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	TY3A-G	Q12173	290 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	POM34	Q12445	299 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	MRPL23	Q12487	163 aa	Predicted RBP	4.88	□□□□□ -1.63
ROT1	YMR200W	NBL1	Q3E7Y6	73 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	TY3A-I	Q99219	290 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	RAD61	Q99359	647 aa		4.88	□□□□□ -1.63
ROT1	YMR200W	GCD2	P12754	651 aa	Predicted RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	PEX1	P24004	1043 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	URK1	P27515	501 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	SPC110	P32380	944 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	HXT3	P32466	567 aa	Known RBP	4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 32.4 ms