RNA–Protein interactions for RNA: YFR050C

PRE4, Transcript of Beta 7 subunit of the 20S proteasome, yeastyeast

Gene PRE4, Length 801 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE4YFR050C MNP1P53163 194 aaPredicted RBP2.35□□□□□ -2.03
PRE4YFR050C ZPR1P53303 486 aaKnown RBP2.35□□□□□ -2.03
PRE4YFR050C CPR8P53728 308 aa2.35□□□□□ -2.03
PRE4YFR050C GFD1Q04839 188 aaKnown RBP2.35□□□□□ -2.03
PRE4YFR050C HOF1Q05080 669 aa2.35□□□□□ -2.03
PRE4YFR050C FAR10Q06001 478 aa2.35□□□□□ -2.03
PRE4YFR050C OSW1Q08692 278 aa2.35□□□□□ -2.03
PRE4YFR050C SLX4Q12098 748 aa2.35□□□□□ -2.03
PRE4YFR050C RAD50P12753 1312 aa2.35□□□□□ -2.03
PRE4YFR050C YEL076C-AP0CX16 216 aa2.34□□□□□ -2.03
PRE4YFR050C YLR464WP0CX17 216 aa2.34□□□□□ -2.03
PRE4YFR050C COX11P19516 300 aaKnown RBP2.34□□□□□ -2.03
PRE4YFR050C HOP1P20050 605 aa2.34□□□□□ -2.03
PRE4YFR050C SRP54P20424 541 aaKnown RBP2.34□□□□□ -2.03
PRE4YFR050C ATP12P22135 325 aa2.34□□□□□ -2.03
PRE4YFR050C AAD3P25612 363 aa2.34□□□□□ -2.03
PRE4YFR050C LHS1P36016 881 aa2.34□□□□□ -2.03
PRE4YFR050C EBP2P36049 427 aaKnown RBP2.34□□□□□ -2.03
PRE4YFR050C MRX3P38172 270 aa2.34□□□□□ -2.03
PRE4YFR050C MUM2P38236 366 aa2.34□□□□□ -2.03
PRE4YFR050C MTC4P38335 694 aaKnown RBP2.34□□□□□ -2.03
PRE4YFR050C YJL193WP39542 402 aa2.34□□□□□ -2.03
PRE4YFR050C YEL076CP39971 216 aa2.34□□□□□ -2.03
PRE4YFR050C NIT2P47016 307 aa2.34□□□□□ -2.03
PRE4YFR050C TAX4P47030 604 aa2.34□□□□□ -2.03
PRE4YFR050C IRC8P47046 822 aa2.34□□□□□ -2.03
PRE4YFR050C SLD3P53135 668 aa2.34□□□□□ -2.03
PRE4YFR050C HOL1P53389 586 aa2.34□□□□□ -2.03
PRE4YFR050C RIM13Q03792 727 aa2.34□□□□□ -2.03
PRE4YFR050C MSA1Q08471 629 aa2.34□□□□□ -2.03
PRE4YFR050C CWC2Q12046 339 aaPredicted RBP2.34□□□□□ -2.03
PRE4YFR050C TMA17Q12513 150 aa2.34□□□□□ -2.03
PRE4YFR050C VPS5Q92331 675 aa2.34□□□□□ -2.03
PRE4YFR050C CPA2P03965 1118 aaKnown RBP2.33□□□□□ -2.04
PRE4YFR050C VPS33P20795 691 aa2.33□□□□□ -2.04
PRE4YFR050C CNE1P27825 502 aa2.33□□□□□ -2.04
PRE4YFR050C YIM1P28625 365 aa2.33□□□□□ -2.04
PRE4YFR050C MTC7P32633 139 aa2.33□□□□□ -2.04
PRE4YFR050C UBC6P33296 250 aaPredicted RBP2.33□□□□□ -2.04
PRE4YFR050C RMA1P36001 430 aaKnown RBP2.33□□□□□ -2.04
PRE4YFR050C HOT13P36078 116 aa2.33□□□□□ -2.04
PRE4YFR050C YBR071WP38243 211 aa2.33□□□□□ -2.04
PRE4YFR050C SAP1P39955 897 aaKnown RBP2.33□□□□□ -2.04
PRE4YFR050C SER3P40054 469 aa2.33□□□□□ -2.04
PRE4YFR050C EMP65P40085 556 aa2.33□□□□□ -2.04
PRE4YFR050C LRO1P40345 661 aa2.33□□□□□ -2.04
PRE4YFR050C BNA3P47039 444 aaKnown RBP2.33□□□□□ -2.04
PRE4YFR050C YJL043WP47053 257 aa2.33□□□□□ -2.04
PRE4YFR050C YDL183CP48569 320 aa2.33□□□□□ -2.04
PRE4YFR050C YGL117WP53133 265 aa2.33□□□□□ -2.04
PRE4YFR050C PEF1P53238 335 aa2.33□□□□□ -2.04
PRE4YFR050C CEG1Q01159 459 aaPredicted RBP2.33□□□□□ -2.04
PRE4YFR050C ARG7Q04728 441 aa2.33□□□□□ -2.04
PRE4YFR050C ORM2Q06144 216 aa2.33□□□□□ -2.04
PRE4YFR050C PEX15Q08215 383 aa2.33□□□□□ -2.04
PRE4YFR050C AFT2Q08957 416 aa2.33□□□□□ -2.04
PRE4YFR050C HOS1Q12214 470 aa2.33□□□□□ -2.04
PRE4YFR050C AI5_ALPHAQ9ZZX1 630 aa2.33□□□□□ -2.04
PRE4YFR050C SES1P07284 462 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C RNR3P21672 869 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C CWH43P25618 953 aa2.32□□□□□ -2.04
PRE4YFR050C MRPL9P31334 269 aa2.32□□□□□ -2.04
PRE4YFR050C PLC1P32383 869 aa2.32□□□□□ -2.04
PRE4YFR050C DSS4P32601 143 aa2.32□□□□□ -2.04
PRE4YFR050C TAF14P35189 244 aa2.32□□□□□ -2.04
PRE4YFR050C RRP3P38712 501 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C OSH3P38713 996 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C SLZ1P40167 298 aa2.32□□□□□ -2.04
PRE4YFR050C YMR147WP40218 223 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C IRC5P43610 853 aa2.32□□□□□ -2.04
PRE4YFR050C YJR120WP47157 116 aa2.32□□□□□ -2.04
PRE4YFR050C RPS15Q01855 142 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C MTD1Q02046 320 aaKnown RBP2.32□□□□□ -2.04
PRE4YFR050C ECM38Q05902 660 aaPredicted RBP2.32□□□□□ -2.04
PRE4YFR050C ARR3Q06598 404 aa2.32□□□□□ -2.04
PRE4YFR050C CCW14O13547 238 aa2.31□□□□□ -2.04
PRE4YFR050C PGK1P00560 416 aaKnown RBP2.31□□□□□ -2.04
PRE4YFR050C PMA2P19657 947 aa2.31□□□□□ -2.04
PRE4YFR050C RIT1P23796 513 aa2.31□□□□□ -2.04
PRE4YFR050C RPC34P32910 317 aa2.31□□□□□ -2.04
PRE4YFR050C STL1P39932 569 aa2.31□□□□□ -2.04
PRE4YFR050C XBP1P40489 647 aa2.31□□□□□ -2.04
PRE4YFR050C NPA3P47122 385 aa2.31□□□□□ -2.04
PRE4YFR050C SAP4P53036 818 aa2.31□□□□□ -2.04
PRE4YFR050C MNT2P53059 558 aa2.31□□□□□ -2.04
PRE4YFR050C ATP23P53722 227 aa2.31□□□□□ -2.04
PRE4YFR050C ZRG17P53735 605 aa2.31□□□□□ -2.04
PRE4YFR050C YNL040WP53960 456 aaPredicted RBP2.31□□□□□ -2.04
PRE4YFR050C WAR1Q03631 944 aa2.31□□□□□ -2.04
PRE4YFR050C SNU56Q03782 492 aaKnown RBP2.31□□□□□ -2.04
PRE4YFR050C ADH6Q04894 360 aaKnown RBP2.31□□□□□ -2.04
PRE4YFR050C PHM6Q05637 104 aa2.31□□□□□ -2.04
PRE4YFR050C DIC1Q06143 298 aa2.31□□□□□ -2.04
PRE4YFR050C YOR378WQ08902 515 aa2.31□□□□□ -2.04
PRE4YFR050C Q0297Q9ZZV8 51 aa2.31□□□□□ -2.04
PRE4YFR050C SSB1P11484 613 aaKnown RBP2.3□□□□□ -2.04
PRE4YFR050C SPT15P13393 240 aaKnown RBP2.3□□□□□ -2.04
PRE4YFR050C APN1P22936 367 aa2.3□□□□□ -2.04
PRE4YFR050C PRR1P28708 518 aa2.3□□□□□ -2.04
PRE4YFR050C PET309P32522 965 aaPredicted RBP2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms