RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	STB1	P42845	420 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	URB2	P47108	1174 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	MTD1	Q02046	320 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	MUB1	Q03162	620 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	PRP16	P15938	1071 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	ITR1	P30605	584 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	NTC20	P38302	140 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	SUL1	P38359	859 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ERG7	P38604	731 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	SET5	P38890	526 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	YJL070C	P40361	888 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	GVP36	P40531	326 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	SMK1	P41808	388 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	DCP2	P53550	970 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	CBK1	P53894	756 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
CDC48	YDL126C	AIM33	Q04516	312 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ADY4	Q05955	493 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	KAP95	Q06142	861 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	YCG1	Q06680	1035 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	NGL1	Q08213	363 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	SGO1	Q08490	590 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	TY3A-G	Q12173	290 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	TY3A-I	Q99219	290 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	DIF1	O13577	133 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	PHO13	P19881	312 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	UBA1	P22515	1024 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	PRP28	P23394	588 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	TYE7	P33122	291 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	YET1	P35723	206 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	FES1	P38260	290 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	DED81	P38707	554 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	SNL1	P40548	159 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ALB1	P47019	175 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	MDV1	P47025	714 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	RAI1	P53063	387 aa	Known RBP	4.56	□□□□□ -1.68
CDC48	YDL126C	LIF1	P53150	421 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	INA17	Q02888	182 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ECM18	Q04623	453 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	YPL277C	Q08989	487 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	AVL9	Q12500	764 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	CSR2	Q12734	1121 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ADF1	Q2V2Q1	113 aa		4.56	□□□□□ -1.68
CDC48	YDL126C	ILV1	P00927	576 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	ARO3	P14843	370 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	PRP22	P24384	1145 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	BUD23	P25627	275 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	RSM22	P36056	628 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	MMS4	P38257	691 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	SRP68	P38687	599 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	PIH1	P38768	344 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	NDT80	P38830	627 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	CTF8	P38877	133 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	YJR061W	P40355	935 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	FMS1	P50264	508 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	DUS1	P53759	423 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	FYV6	P53913	173 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	CWC2	Q12046	339 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	NUR1	Q12066	484 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	VPS17	P32913	551 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	GDT1	P38301	280 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	YNL144C	P53907	740 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	VPS9	P54787	451 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	RRN5	Q02983	363 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	EBS1	Q03466	884 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	YML037C	Q03703	340 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	ARX1	Q03862	593 aa	Known RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	RPC11	Q04307	110 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC48	YDL126C	SPC24	Q04477	213 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	YAP7	Q08182	245 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	APL4	Q12028	832 aa		4.55	□□□□□ -1.68
CDC48	YDL126C	TUB3	P09734	445 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	YEL076C-A	P0CX16	216 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	YLR464W	P0CX17	216 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	MIA40	P36046	403 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	PXL1	P36166	706 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	THI2	P38141	450 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	PHO88	P38264	188 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	MSR1	P38714	643 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	LYS9	P38999	446 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	YEL076C	P39971	216 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	URM1	P40554	99 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	PRP31	P49704	494 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	DUO1	P53168	247 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	GPD1	Q00055	391 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	YSA1	Q01976	231 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	AIM32	Q04689	311 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	PIG1	Q06216	648 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	TAF3	Q12297	353 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	HTZ1	Q12692	134 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	TPK1	P06244	397 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	YAP1	P19880	650 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	SPO11	P23179	398 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	CAD1	P24813	409 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	SSE1	P32589	693 aa	Known RBP	4.54	□□□□□ -1.68
CDC48	YDL126C	SLC1	P33333	303 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	YKR015C	P36111	568 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	CDS1	P38221	457 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	YDL183C	P48569	320 aa		4.54	□□□□□ -1.68
CDC48	YDL126C	PSP1	P50896	841 aa	Known RBP	4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 21.6 ms