RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FCER1AP12319 257 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 TAL1P17542 331 aaPredicted RBP12.94□□□□□ -0.34
LIG1-211ENST00000596457 ADORA2AP29274 412 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 UBXN2AP68543 259 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 FGD1P98174 961 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 IRF5Q13568 498 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 CCL14Q16627 93 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 ASPRV1Q53RT3 343 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 BTNL9Q6UXG8 535 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 STAG2Q8N3U4 1231 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 PXYLP1Q8TE99 480 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 TMEM87BQ96K49 555 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 MYL10Q9BUA6 226 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 LY9Q9HBG7 655 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 CCPG1Q9ULG6 757 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 NAP1L2Q9ULW6 460 aaPredicted RBP12.94□□□□□ -0.34
LIG1-211ENST00000596457 COLQQ9Y215 455 aaPredicted RBP12.94□□□□□ -0.34
LIG1-211ENST00000596457 TRIOBPQ9H2D6 2365 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 PLXNA1Q9UIW2 1896 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 POTEFA5A3E0 1075 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 SH2B2O14492 632 aaPredicted RBP12.93□□□□□ -0.34
LIG1-211ENST00000596457 STRNO43815 780 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 INHAP05111 366 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 PGK2P07205 417 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 COPB2P35606 906 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 TRIM32Q13049 653 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 GRB14Q14449 540 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 KCTD2Q14681 263 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 MTFR1Q15390 333 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 TSGA10IPQ3SY00 556 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 DHX32Q7L7V1 743 aaKnown RBP12.93□□□□□ -0.34
LIG1-211ENST00000596457 CCDC144CPQ8IYA2 1237 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 ZNF654Q8IZM8 581 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 NPLOC4Q8TAT6 608 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 DDX11Q96FC9 970 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 TRERF1Q96PN7 1200 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 COL6A3P12111 3177 aa12.93□□□□□ -0.34
LIG1-211ENST00000596457 ZNF536O15090 1300 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 KIAA0100Q14667 2235 aaKnown RBP12.92□□□□□ -0.34
LIG1-211ENST00000596457 SMCHD1A6NHR9 2005 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 KLRF2D3W0D1 207 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 RXRAP19793 462 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 OAZ1P54368 228 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 GRM4Q14833 912 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 USH1GQ495M9 461 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 BLOC1S2Q6QNY1 142 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 SYNE3Q6ZMZ3 975 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 ADGRF4Q8IZF3 695 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 ANKRD35Q8N283 1001 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 TMTC2Q8N394 836 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 PIBF1Q8WXW3 757 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 TRIB2Q92519 343 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 USP6NLQ92738 828 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 APBA2Q99767 749 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 RANBP17Q9H2T7 1088 aaKnown RBP12.92□□□□□ -0.34
LIG1-211ENST00000596457 RNF146Q9NTX7 359 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 SLC5A4Q9NY91 659 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 MAD2L2Q9UI95 211 aa12.92□□□□□ -0.34
LIG1-211ENST00000596457 COBLO75128 1261 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 HMGCRP04035 888 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 ICAM1P05362 532 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 HMGB1P09429 215 aaKnown RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 CCL5P13501 91 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 EN2P19622 333 aaPredicted RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 CASTP20810 708 aaKnown RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 PSMA5P28066 241 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 EXOSC10Q01780 885 aaKnown RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 CDC37Q16543 378 aaPredicted RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 MUM1L1Q5H9M0 696 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 Q6ZUG5 572 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 CHST13Q8NET6 341 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 CTCFLQ8NI51 663 aaPredicted RBP12.91□□□□□ -0.34
LIG1-211ENST00000596457 KCNB2Q92953 911 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 MTA3Q9BTC8 594 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 RNF208Q9H0X6 261 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 UNC93B1Q9H1C4 597 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 ACAD9Q9H845 621 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 FLRT1Q9NZU1 646 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 FBXO40Q9UH90 709 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 SLC12A7Q9Y666 1083 aa12.91□□□□□ -0.34
LIG1-211ENST00000596457 PALM3A6NDB9 673 aaPredicted RBP12.9□□□□□ -0.34
LIG1-211ENST00000596457 SEC24BO95487 1268 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 GJB1P08034 283 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 XRCC5P13010 732 aaKnown RBP12.9□□□□□ -0.34
LIG1-211ENST00000596457 LIFRP42702 1097 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 TROAPQ12815 778 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 TKFCQ3LXA3 575 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 MFSD14CQ5VZR4 134 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 NSMFQ6X4W1 530 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 HOMER1Q86YM7 354 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 TRMT44Q8IYL2 757 aaKnown RBP12.9□□□□□ -0.34
LIG1-211ENST00000596457 ABRAQ8N0Z2 381 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 JMJD4Q9H9V9 463 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 ZNF236Q9UL36 1845 aa12.9□□□□□ -0.34
LIG1-211ENST00000596457 KLF18A0A0U1RQI7 1052 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 EPB41L2O43491 1005 aaKnown RBP12.89□□□□□ -0.35
LIG1-211ENST00000596457 DDAH1O94760 285 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 CALM1P0DP23 149 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 CALM2P0DP24 149 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms