RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CEP63Q96MT8 703 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ABHD10Q9NUJ1 306 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 HPSEQ9Y251 543 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CLIC4Q9Y696 253 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 LTKP29376 864 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SLFN12Q8IYM2 578 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 NPHP4O75161 1426 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CRACR2BQ8N4Y2 399 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 NOP2P46087 812 aaKnown RBP7.77□□□□□ -1.16
SYNE1-216ENST00000461872 USP14P54578 494 aa7.77□□□□□ -1.16
SYNE1-216ENST00000461872 LMNTD2Q8IXW0 634 aa7.77□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF710Q8N1W2 664 aa7.77□□□□□ -1.16
SYNE1-216ENST00000461872 GRK7Q8WTQ7 553 aa7.77□□□□□ -1.16
SYNE1-216ENST00000461872 KIFAP3Q92845 792 aa7.77□□□□□ -1.16
SYNE1-216ENST00000461872 TYW1Q9NV66 732 aaKnown RBP7.77□□□□□ -1.16
SYNE1-216ENST00000461872 SSU72P8A0A1W2PR75 194 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 CHUKO15111 745 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 ATP5HO75947 161 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 IGKV5-2P06315 115 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 OR52Z1P0C646 297 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 PDE4DQ08499 809 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 LRIG3Q6UXM1 1119 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 TUBB6Q9BUF5 446 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 LMNB1P20700 586 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 MKRN3Q13064 507 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 SRLQ86TD4 932 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 TUBGCP2Q9BSJ2 902 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 HNRNPCL1O60812 293 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 RAD51AP2Q09MP3 1159 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 GDAP1L1Q96MZ0 367 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 PRPF6O94906 941 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 BCAS4Q8TDM0 211 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 FERMT1Q9BQL6 677 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 ATRNO75882 1429 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 PDS5AQ29RF7 1337 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 ZPR1O75312 459 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 BCRP11274 1271 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 NR1I3Q14994 352 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 P2RX5Q93086 422 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 TNKSO95271 1327 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 TCP11X2Q5H9J9 407 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 SYMPKQ92797 1274 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 SYTL4Q96C24 671 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 TRIM11Q96F44 468 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 NLRP3Q96P20 1036 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 RABGAP1Q9Y3P9 1069 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 ADKP55263 362 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 NBPF10Q6P3W6 841 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 RSRC2Q7L4I2 434 aaKnown RBP7.77□□□□□ -1.17
SYNE1-216ENST00000461872 SLF1Q9BQI6 1058 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 MMRN2Q9H8L6 949 aa7.77□□□□□ -1.17
SYNE1-216ENST00000461872 MIF4GDA9UHW6 222 aaKnown RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 PGRMC1O00264 195 aaKnown RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CCT6AP40227 531 aaKnown RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 TIMM10P62072 90 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 FRMD4BQ9Y2L6 1034 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 H0YCG3 227 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 MCM7P33993 719 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SND1Q7KZF4 910 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ASIC2Q16515 512 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CCSER1Q9C0I3 900 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 VCXQ9H320 206 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SLITRK6Q9H5Y7 841 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 PRDM4Q9UKN5 801 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 GSTTP1A0A1W2PQM5 241 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 C1orf131Q8NDD1 294 aaKnown RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 DKC1O60832 514 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SSBP05455 408 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ARID4AP29374 1257 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ZNF76P36508 570 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ATP2C1P98194 919 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SPDYCQ5MJ68 293 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 DENND2CQ68D51 928 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 MYOCDQ8IZQ8 938 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 BATF3Q9NR55 127 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 LRWD1Q9UFC0 647 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 PCDHA4Q9UN74 947 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 FOSP01100 380 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ADCY7P51828 1080 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CAPN11Q9UMQ6 739 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 V9GY48 417 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 MRC1P22897 1456 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CFAP73A6NFT4 308 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 BTBD18B2RXH4 712 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 THAP12O43422 761 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 AARSP49588 968 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 IRX4P78413 519 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC93Q567U6 631 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 NEK8Q86SG6 692 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 DZIP3Q86Y13 1208 aaKnown RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SUDS3Q9H7L9 328 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-216ENST00000461872 TMOD2Q9NZR1 351 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ORC4O43929 436 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 ZAP70P43403 619 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 CAV1Q03135 178 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 SLC35F6Q8N357 371 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 MMGT1Q8N4V1 131 aa7.76□□□□□ -1.17
SYNE1-216ENST00000461872 GEMIN8Q9NWZ8 242 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms