RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 NISCHQ9Y2I1 1504 aa13.06□□□□□ -0.32
SYNE1-216ENST00000461872 CCDC180Q9P1Z9 1646 aa11.27□□□□□ -0.61
SYNE1-216ENST00000461872 ZEB1P37275 1124 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-216ENST00000461872 SUPT5HO00267 1087 aaKnown RBP11.25□□□□□ -0.61
SYNE1-216ENST00000461872 PELP1Q8IZL8 1130 aaKnown RBP11.25□□□□□ -0.61
SYNE1-216ENST00000461872 DCAF8L2P0C7V8 631 aa11.12□□□□□ -0.63
SYNE1-216ENST00000461872 MYT1Q01538 1121 aa11.11□□□□□ -0.63
SYNE1-216ENST00000461872 SHROOM4Q9ULL8 1493 aa11.1□□□□□ -0.63
SYNE1-216ENST00000461872 ZCCHC6Q5VYS8 1495 aaKnown RBP11.04□□□□□ -0.64
SYNE1-216ENST00000461872 HRCP23327 699 aa10.98□□□□□ -0.65
SYNE1-216ENST00000461872 DCAF1Q9Y4B6 1507 aa10.93□□□□□ -0.66
SYNE1-216ENST00000461872 TRIM26Q12899 539 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-216ENST00000461872 CHIC1Q5VXU3 224 aa10.84□□□□□ -0.67
SYNE1-216ENST00000461872 PCGF6Q9BYE7 350 aa10.84□□□□□ -0.67
SYNE1-216ENST00000461872 CENPBP07199 599 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-216ENST00000461872 TRIM41Q8WV44 630 aa10.74□□□□□ -0.69
SYNE1-216ENST00000461872 APLP2Q06481 763 aa10.67□□□□□ -0.7
SYNE1-216ENST00000461872 MYO15BQ96JP2 1530 aa10.66□□□□□ -0.7
SYNE1-216ENST00000461872 CLSPNQ9HAW4 1339 aa10.55□□□□□ -0.72
SYNE1-216ENST00000461872 CCER1Q8TC90 406 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-216ENST00000461872 ABCC9O60706 1549 aa10.48□□□□□ -0.73
SYNE1-216ENST00000461872 NACADO15069 1562 aa10.47□□□□□ -0.73
SYNE1-216ENST00000461872 EEA1Q15075 1411 aa10.46□□□□□ -0.73
SYNE1-216ENST00000461872 RB1CC1Q8TDY2 1594 aa10.42□□□□□ -0.74
SYNE1-216ENST00000461872 FAM9AQ8IZU1 332 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-216ENST00000461872 TTBK1Q5TCY1 1321 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-216ENST00000461872 UBTFP17480 764 aaKnown RBP10.31□□□□□ -0.76
SYNE1-216ENST00000461872 RSF1Q96T23 1441 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-216ENST00000461872 SCRIBQ14160 1630 aa10.29□□□□□ -0.76
SYNE1-216ENST00000461872 BAZ1AQ9NRL2 1556 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-216ENST00000461872 LOC105371045A0A1W2PR82 267 aa10.28□□□□□ -0.76
SYNE1-216ENST00000461872 DIEXFQ68CQ4 756 aaKnown RBP10.26□□□□□ -0.77
SYNE1-216ENST00000461872 NEFLP07196 543 aa10.25□□□□□ -0.77
SYNE1-216ENST00000461872 ACIN1Q9UKV3 1341 aaKnown RBP10.19□□□□□ -0.78
SYNE1-216ENST00000461872 ZNF316A6NFI3 1004 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-216ENST00000461872 TNIKQ9UKE5 1360 aa10.14□□□□□ -0.79
SYNE1-216ENST00000461872 GOLGA3Q08378 1498 aa10.14□□□□□ -0.79
SYNE1-216ENST00000461872 PPARGC1BQ86YN6 1023 aaKnown RBP10.14□□□□□ -0.79
SYNE1-216ENST00000461872 CSRNP3Q8WYN3 585 aa10.13□□□□□ -0.79
SYNE1-216ENST00000461872 WRNQ14191 1432 aaPredicted RBP eCLIP10.12□□□□□ -0.79
SYNE1-216ENST00000461872 CEP164Q9UPV0 1460 aa10.1□□□□□ -0.79
SYNE1-216ENST00000461872 MYT1LQ9UL68 1186 aa10.07□□□□□ -0.8
SYNE1-216ENST00000461872 TOP2AP11388 1531 aaKnown RBP10.05□□□□□ -0.8
SYNE1-216ENST00000461872 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
SYNE1-216ENST00000461872 CEP162Q5TB80 1403 aa10.05□□□□□ -0.8
SYNE1-216ENST00000461872 EHMT2Q96KQ7 1210 aa10.05□□□□□ -0.8
SYNE1-216ENST00000461872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-216ENST00000461872 BAZ1BQ9UIG0 1483 aaKnown RBP10.01□□□□□ -0.81
SYNE1-216ENST00000461872 CLIP1P30622 1438 aa10.01□□□□□ -0.81
SYNE1-216ENST00000461872 GTF3C3Q9Y5Q9 886 aa10□□□□□ -0.81
SYNE1-216ENST00000461872 SMARCA2P51531 1590 aa9.96□□□□□ -0.81
SYNE1-216ENST00000461872 TIMELESSQ9UNS1 1208 aa9.96□□□□□ -0.82
SYNE1-216ENST00000461872 VPS8Q8N3P4 1428 aa9.93□□□□□ -0.82
SYNE1-216ENST00000461872 YTHDC1Q96MU7 727 aaKnown RBP9.93□□□□□ -0.82
SYNE1-216ENST00000461872 MROH2BQ7Z745 1585 aa9.91□□□□□ -0.82
SYNE1-216ENST00000461872 SMARCA4P51532 1647 aa9.91□□□□□ -0.82
SYNE1-216ENST00000461872 HNRNPUL2Q1KMD3 747 aaKnown RBP9.9□□□□□ -0.82
SYNE1-216ENST00000461872 SCAF1Q9H7N4 1312 aaKnown RBP9.88□□□□□ -0.83
SYNE1-216ENST00000461872 KIF27Q86VH2 1401 aa9.87□□□□□ -0.83
SYNE1-216ENST00000461872 KIF21BO75037 1637 aa9.86□□□□□ -0.83
SYNE1-216ENST00000461872 ANP32CO43423 234 aa9.86□□□□□ -0.83
SYNE1-216ENST00000461872 FHAD1B1AJZ9 1412 aa9.85□□□□□ -0.83
SYNE1-216ENST00000461872 CECR2Q9BXF3 1484 aa9.84□□□□□ -0.83
SYNE1-216ENST00000461872 WIZO95785 1651 aa9.83□□□□□ -0.84
SYNE1-216ENST00000461872 NEUROD1Q13562 356 aa9.82□□□□□ -0.84
SYNE1-216ENST00000461872 CCDC88BA6NC98 1476 aa9.82□□□□□ -0.84
SYNE1-216ENST00000461872 ERICH3Q5RHP9 1530 aa9.8□□□□□ -0.84
SYNE1-216ENST00000461872 ERICH6BQ5W0A0 696 aa9.79□□□□□ -0.84
SYNE1-216ENST00000461872 CDK11AQ9UQ88 783 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-216ENST00000461872 TONSLQ96HA7 1378 aa9.75□□□□□ -0.85
SYNE1-216ENST00000461872 RTL5Q5HYW3 569 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-216ENST00000461872 CCNB3Q8WWL7 1395 aa9.73□□□□□ -0.85
SYNE1-216ENST00000461872 PEG3Q9GZU2 1588 aa9.71□□□□□ -0.85
SYNE1-216ENST00000461872 CCER2I3L3R5 266 aa9.71□□□□□ -0.85
SYNE1-216ENST00000461872 RANGAP1P46060 587 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-216ENST00000461872 DAXXQ9UER7 740 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-216ENST00000461872 ABCC8Q09428 1581 aa9.68□□□□□ -0.86
SYNE1-216ENST00000461872 ATP1B4Q9UN42 357 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-216ENST00000461872 SOGA1O94964 1423 aa9.67□□□□□ -0.86
SYNE1-216ENST00000461872 FAM50AQ14320 339 aaKnown RBP9.67□□□□□ -0.86
SYNE1-216ENST00000461872 MIER1Q8N108 512 aa9.65□□□□□ -0.87
SYNE1-216ENST00000461872 FMN1Q68DA7 1419 aa9.64□□□□□ -0.87
SYNE1-216ENST00000461872 MAP3K1Q13233 1512 aa9.64□□□□□ -0.87
SYNE1-216ENST00000461872 SETD5Q9C0A6 1442 aa9.63□□□□□ -0.87
SYNE1-216ENST00000461872 ITGAEP38570 1179 aa9.62□□□□□ -0.87
SYNE1-216ENST00000461872 HMGXB3Q12766 1538 aa9.62□□□□□ -0.87
SYNE1-216ENST00000461872 TOP2BQ02880 1626 aa9.62□□□□□ -0.87
SYNE1-216ENST00000461872 ANP32AP39687 249 aaKnown RBP9.61□□□□□ -0.87
SYNE1-216ENST00000461872 ARHGAP35Q9NRY4 1499 aa9.61□□□□□ -0.87
SYNE1-216ENST00000461872 ATAD2BQ9ULI0 1458 aa9.61□□□□□ -0.87
SYNE1-216ENST00000461872 MTUS2Q5JR59 1369 aa9.61□□□□□ -0.87
SYNE1-216ENST00000461872 EIF4G1Q04637 1599 aaKnown RBP9.61□□□□□ -0.87
SYNE1-216ENST00000461872 ANP32EQ9BTT0 268 aa9.6□□□□□ -0.87
SYNE1-216ENST00000461872 PABPN1Q86U42 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
SYNE1-216ENST00000461872 RRBP1Q9P2E9 1410 aaKnown RBP9.58□□□□□ -0.88
SYNE1-216ENST00000461872 CUX1P39880 1505 aa9.57□□□□□ -0.88
SYNE1-216ENST00000461872 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.57□□□□□ -0.88
SYNE1-216ENST00000461872 EFCAB5A4FU69 1503 aa9.57□□□□□ -0.88
SYNE1-216ENST00000461872 ARID4BQ4LE39 1312 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-216ENST00000461872 RAPGEF2Q9Y4G8 1499 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms