RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CCDC69A6NI79 296 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 RXRAP19793 462 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 CASTP20810 708 aaKnown RBP17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 ADORA2AP29274 412 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 MAP2K5Q13163 448 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 BLOC1S2Q6QNY1 142 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 ADGRF4Q8IZF3 695 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 HOMER2Q9NSB8 354 aa17.59■□□□□ 0.41
SMPDL3A-201ENST00000368440 KLRF2D3W0D1 207 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 HMGB1P09429 215 aaKnown RBP17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 RPS6KB1P23443 525 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 CCL14Q16627 93 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 NBPF11Q86T75 865 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 SGMS1Q86VZ5 419 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 NPLOC4Q8TAT6 608 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 ARMC5Q96C12 935 aa17.58■□□□□ 0.41
SMPDL3A-201ENST00000368440 DDAH1O94760 285 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 MYCP01106 439 aaPredicted RBP17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 ICAM1P05362 532 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 ALAS1P13196 640 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 RGS2P41220 211 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 SLAIN1Q8ND83 568 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 TRIB2Q92519 343 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 MMP19Q99542 508 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 APBA2Q99767 749 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 JMJD4Q9H9V9 463 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 VAT1LQ9HCJ6 419 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 BRPF3Q9ULD4 1205 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 CCPG1Q9ULG6 757 aa17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 RBM19Q9Y4C8 960 aaKnown RBP17.58■□□□□ 0.4
SMPDL3A-201ENST00000368440 LCTP09848 1927 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 STRNO43815 780 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 COBLO75128 1261 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 FCER1AP12319 257 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 COPB2P35606 906 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 TRIM32Q13049 653 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 CDC37Q16543 378 aaPredicted RBP17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 Q6ZUG5 572 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 CCDC144CPQ8IYA2 1237 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 TMTC2Q8N394 836 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 PXYLP1Q8TE99 480 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 ZNF333Q96JL9 665 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 RNF146Q9NTX7 359 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 FLRT1Q9NZU1 646 aa17.57■□□□□ 0.4
SMPDL3A-201ENST00000368440 RBBP6Q7Z6E9 1792 aaKnown RBP17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 CCDC85CA6NKD9 419 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 DHX16O60231 1041 aaKnown RBP17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 PGK2P07205 417 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 PSMA5P28066 241 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 MUM1L1Q5H9M0 696 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 APOA5Q6Q788 366 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 ABRAQ8N0Z2 381 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 UPF3BQ9BZI7 483 aaKnown RBP17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 ZSWIM6Q9HCJ5 1215 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 SLC12A7Q9Y666 1083 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 CYTH3O43739 400 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 INHAP05111 366 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 HOXC6P09630 235 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 XRCC5P13010 732 aaKnown RBP17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 MTFR1Q15390 333 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 RUFY3Q7L099 469 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 MICU3Q86XE3 530 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 TRERF1Q96PN7 1200 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 MAP3K14Q99558 947 aa17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 BAZ2BQ9UIF8 2168 aaKnown RBP17.56■□□□□ 0.4
SMPDL3A-201ENST00000368440 CAPN15O75808 1086 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 PLEKHA8P1O95397 391 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 APOBRQ0VD83 1088 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 KCTD2Q14681 263 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 QRICH1Q2TAL8 776 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 DPP9Q86TI2 863 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 CHST13Q8NET6 341 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 CTCFLQ8NI51 663 aaPredicted RBP17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 BRF1Q92994 677 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 ACAD9Q9H845 621 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 BIN2Q9UBW5 565 aaPredicted RBP17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 BRCA2P51587 3418 aa17.55■□□□□ 0.4
SMPDL3A-201ENST00000368440 KLF18A0A0U1RQI7 1052 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 USH1GQ495M9 461 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 CMTR1Q8N1G2 835 aaKnown RBP17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 MTMR8Q96EF0 704 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 AGXT2Q9BYV1 514 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 BACH2Q9BYV9 841 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 TM6SF1Q9BZW5 370 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 RIOX1Q9H6W3 641 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 HMGCRP04035 888 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 FGD1P98174 961 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 TKFCQ3LXA3 575 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 A1CFQ9NQ94 594 aaKnown RBP17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 FBXO40Q9UH90 709 aa17.54■□□□□ 0.4
SMPDL3A-201ENST00000368440 NFIBO00712 420 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 PPP1R11O60927 126 aaPredicted RBP17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 CALM1P0DP23 149 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 CALM2P0DP24 149 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 CALM3P0DP25 149 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 TOB2Q14106 344 aaPredicted RBP17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 ZNF792Q3KQV3 632 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 HOMER1Q86YM7 354 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 ANKRD35Q8N283 1001 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms