RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W HRK1Q08732 759 aaKnown RBP3.86□□□□□ -1.79
USA1YML029W YLR053CQ12026 108 aa3.86□□□□□ -1.79
USA1YML029W RMD5Q12508 421 aa3.86□□□□□ -1.79
USA1YML029W BRR1Q99177 341 aaPredicted RBP3.86□□□□□ -1.79
USA1YML029W YLR149CQ99296 730 aa3.86□□□□□ -1.79
USA1YML029W CPA1P07258 411 aaKnown RBP3.86□□□□□ -1.79
USA1YML029W SBP1P10080 294 aaKnown RBP3.86□□□□□ -1.79
USA1YML029W TEC1P18412 486 aa3.86□□□□□ -1.79
USA1YML029W RPB4P20433 221 aaPredicted RBP3.86□□□□□ -1.79
USA1YML029W RPB10P22139 70 aa3.86□□□□□ -1.79
USA1YML029W TRX2P22803 104 aaKnown RBP3.86□□□□□ -1.79
USA1YML029W GDA1P32621 518 aa3.86□□□□□ -1.79
USA1YML029W LOS1P33418 1100 aaPredicted RBP3.86□□□□□ -1.79
USA1YML029W YHR182WP38870 785 aa3.86□□□□□ -1.79
USA1YML029W NAB3P38996 802 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
USA1YML029W FAA3P39002 694 aa3.86□□□□□ -1.79
USA1YML029W ALG8P40351 577 aa3.86□□□□□ -1.79
USA1YML029W YJL070CP40361 888 aa3.86□□□□□ -1.79
USA1YML029W LIA1P47120 325 aaKnown RBP3.86□□□□□ -1.79
USA1YML029W BIR1P47134 954 aa3.86□□□□□ -1.79
USA1YML029W BCH1Q05029 724 aa3.86□□□□□ -1.79
USA1YML029W ATG34Q12292 412 aa3.86□□□□□ -1.79
USA1YML029W RGS2Q99188 309 aa3.86□□□□□ -1.79
USA1YML029W SEC63P14906 663 aa3.85□□□□□ -1.79
USA1YML029W SCL1P21243 252 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W TFB1P32776 642 aa3.85□□□□□ -1.79
USA1YML029W GND1P38720 489 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W YHI9P38765 294 aa3.85□□□□□ -1.79
USA1YML029W GIC1P38785 314 aa3.85□□□□□ -1.79
USA1YML029W LIN1P38852 340 aaPredicted RBP3.85□□□□□ -1.79
USA1YML029W AXL2P38928 823 aa3.85□□□□□ -1.79
USA1YML029W OAF1P39720 1047 aaPredicted RBP3.85□□□□□ -1.79
USA1YML029W PAN6P40459 309 aa3.85□□□□□ -1.79
USA1YML029W TDA10P42938 290 aa3.85□□□□□ -1.79
USA1YML029W SAP4P53036 818 aa3.85□□□□□ -1.79
USA1YML029W UBX4P54730 416 aa3.85□□□□□ -1.79
USA1YML029W REG1Q00816 1014 aa3.85□□□□□ -1.79
USA1YML029W ERG20P08524 352 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W RPP1BP10622 106 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W MET8P15807 274 aa3.85□□□□□ -1.79
USA1YML029W HSP26P15992 214 aaKnown RBP RIP-Chip data3.85□□□□□ -1.79not detected
USA1YML029W VAN1P23642 535 aa3.85□□□□□ -1.79
USA1YML029W RBK1P25332 333 aa3.85□□□□□ -1.79
USA1YML029W RFA2P26754 273 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W PHA2P32452 334 aa3.85□□□□□ -1.79
USA1YML029W CYM1P32898 989 aa3.85□□□□□ -1.79
USA1YML029W YHR045WP38775 560 aa3.85□□□□□ -1.79
USA1YML029W CYC2P38909 366 aa3.85□□□□□ -1.79
USA1YML029W SSN3P39073 555 aa3.85□□□□□ -1.79
USA1YML029W PEP8P40335 379 aa3.85□□□□□ -1.79
USA1YML029W PAN2P53010 1115 aaPredicted RBP3.85□□□□□ -1.79
USA1YML029W MPS2P53159 387 aa3.85□□□□□ -1.79
USA1YML029W COG7P53195 279 aa3.85□□□□□ -1.79
USA1YML029W BUD32P53323 261 aa3.85□□□□□ -1.79
USA1YML029W VHS1Q03785 461 aa3.85□□□□□ -1.79
USA1YML029W RPN9Q04062 393 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W PLB3Q08108 686 aa3.85□□□□□ -1.79
USA1YML029W RPN8Q08723 338 aaKnown RBP3.85□□□□□ -1.79
USA1YML029W HEM2P05373 342 aa3.84□□□□□ -1.79
USA1YML029W RAD3P06839 778 aa3.84□□□□□ -1.79
USA1YML029W GAL11P19659 1081 aa3.84□□□□□ -1.79
USA1YML029W SEC14P24280 304 aaKnown RBP3.84□□□□□ -1.79
USA1YML029W STE5P32917 917 aa3.84□□□□□ -1.79
USA1YML029W THI80P35202 319 aa3.84□□□□□ -1.79
USA1YML029W SRX1P36077 127 aa3.84□□□□□ -1.79
USA1YML029W RPF2P36160 344 aaKnown RBP3.84□□□□□ -1.79
USA1YML029W YBR062CP38239 180 aa3.84□□□□□ -1.79
USA1YML029W GDT1P38301 280 aaPredicted RBP3.84□□□□□ -1.79
USA1YML029W YJL206CP39529 758 aa3.84□□□□□ -1.79
USA1YML029W PFK26P40433 827 aaKnown RBP3.84□□□□□ -1.79
USA1YML029W BOL2P53082 120 aa3.84□□□□□ -1.79
USA1YML029W YPL109CQ02981 657 aa3.84□□□□□ -1.79
USA1YML029W YLL032CQ07834 825 aaKnown RBP RIP-Chip data3.84□□□□□ -1.79not detected
USA1YML029W NUS1Q12063 375 aa3.84□□□□□ -1.79
USA1YML029W GNT1Q12096 491 aa3.84□□□□□ -1.79
USA1YML029W AHA1Q12449 350 aaKnown RBP3.84□□□□□ -1.79
USA1YML029W SPE4Q12455 300 aa3.84□□□□□ -1.79
USA1YML029W HSH49Q99181 213 aaPredicted RBP3.84□□□□□ -1.79
USA1YML029W MST1P07236 462 aa3.84□□□□□ -1.8
USA1YML029W LEU1P07264 779 aaKnown RBP3.84□□□□□ -1.8
USA1YML029W AAD3P25612 363 aa3.84□□□□□ -1.8
USA1YML029W PRP18P33411 251 aaPredicted RBP3.84□□□□□ -1.8
USA1YML029W GMH1P36125 273 aa3.84□□□□□ -1.8
USA1YML029W YBR197CP38306 217 aa3.84□□□□□ -1.8
USA1YML029W YBR259WP38338 688 aa3.84□□□□□ -1.8
USA1YML029W UBA4P38820 440 aa3.84□□□□□ -1.8
USA1YML029W YAL037WP39728 267 aa3.84□□□□□ -1.8
USA1YML029W SPF1P39986 1215 aaKnown RBP3.84□□□□□ -1.8
USA1YML029W FET5P43561 622 aa3.84□□□□□ -1.8
USA1YML029W TEL2P53038 688 aa3.84□□□□□ -1.8
USA1YML029W TAF6P53040 516 aa3.84□□□□□ -1.8
USA1YML029W SLM2P53955 656 aa3.84□□□□□ -1.8
USA1YML029W YMR209CQ03648 457 aa3.84□□□□□ -1.8
USA1YML029W EAF1Q06337 982 aa3.84□□□□□ -1.8
USA1YML029W SMF3Q12078 473 aaPredicted RBP3.84□□□□□ -1.8
USA1YML029W RRP42Q12277 265 aaPredicted RBP3.84□□□□□ -1.8
USA1YML029W YMR030W-AQ3E760 96 aa3.84□□□□□ -1.8
USA1YML029W PRT1P06103 763 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W CLN2P20438 545 aa3.83□□□□□ -1.8
USA1YML029W YSR3P23501 404 aa3.83□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms