RNA–Protein interactions for RNA: YFL002C

SPB4, Transcript of Putative ATP-dependent RNA helicase, yeast

Gene SPB4, Length 1,821 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPB4	YFL002C	SOF1	P33750	489 aa	Known RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	YBR144C	P34215	104 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	UIP5	P36137	443 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	VBA2	P38358	474 aa	Known RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	MRX1	P40050	688 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	DPB11	P47027	764 aa	Predicted RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	OCA1	P50946	238 aa	Predicted RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	CTF4	Q01454	927 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	PRP3	Q03338	469 aa	Predicted RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	YML053C	Q04978	212 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
SPB4	YFL002C	KEL3	Q08979	651 aa	Predicted RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	RPN5	Q12250	445 aa	Known RBP	4.17	□□□□□ -1.74
SPB4	YFL002C	CTF3	Q12748	733 aa		4.17	□□□□□ -1.74
SPB4	YFL002C	YLR358C	O13565	187 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	PPR1	P07272	904 aa	Predicted RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	KGD1	P20967	1014 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	APN1	P22936	367 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	GDA1	P32621	518 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	LHS1	P36016	881 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	HEL1	P36113	551 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	ECM10	P39987	644 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	FAR3	P46671	204 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	FYV8	P46949	817 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	COG2	P53271	262 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	IPI3	P53877	555 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	DON1	Q05610	365 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	RBS1	Q05672	457 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	MMR1	Q06324	491 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	WHI2	P12611	486 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	MRP13	P12686	339 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	RPL3	P14126	387 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	PRP6	P19735	899 aa	Predicted RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	HCS1	P34243	683 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	SNU114	P36048	1008 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	FTH1	P38310	465 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	ARG2	P40360	574 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	VPS73	P53142	486 aa	Known RBP	4.16	□□□□□ -1.74
SPB4	YFL002C	YGR111W	P53265	400 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	PLM2	Q04383	521 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	AIM39	Q08223	395 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	REX3	Q12090	404 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	ATG9	Q12142	997 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	INP53	Q12271	1107 aa		4.16	□□□□□ -1.74
SPB4	YFL002C	RNR3	P21672	869 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	GAS1	P22146	559 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	PUP3	P25451	205 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	HXT3	P32466	567 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	LTV1	P34078	463 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	GMH1	P36125	273 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	PPS1	P38148	807 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	YHR054C	P38780	354 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	GIP4	P39732	760 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	PKP1	P40530	394 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	PMT6	P42934	759 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	STB2	P46679	850 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	APT1	P49435	187 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	MNP1	P53163	194 aa	Predicted RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	COQ6	P53318	479 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	TOF1	P53840	1238 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	HOT1	Q03213	719 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	YDR179W-A	Q03983	463 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	GFD1	Q04839	188 aa	Known RBP	4.15	□□□□□ -1.75
SPB4	YFL002C	YLR040C	Q07988	224 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	NTO1	Q12311	748 aa		4.15	□□□□□ -1.75
SPB4	YFL002C	SGS1	P35187	1447 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	GLK1	P17709	500 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	ART10	P18634	518 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	HRR25	P29295	494 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	SMI1	P32566	505 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	RML2	P32611	393 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	YME2	P32843	850 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	DAD2	P36162	133 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	RRT2	P38332	387 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	ELO1	P39540	310 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	SAP1	P39955	897 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	NDC80	P40460	691 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	ASG1	P40467	964 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	MDE1	P47095	244 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	YGR127W	P53275	312 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	SMX3	P54999	86 aa	Predicted RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	RAD33	Q04231	177 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	LEU9	Q12166	604 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	TAF3	Q12297	353 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	ZPS1	Q12512	249 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	TPK2	P06245	380 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	RPL1A	P0CX43	217 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	RPL1B	P0CX44	217 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	RRP43	P25359	394 aa	Predicted RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	IMG1	P25626	169 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	MRPL9	P31334	269 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	UGP1	P32861	499 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	NIP100	P33420	868 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	SIF2	P38262	535 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	AVT1	P47082	602 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	PHO23	P50947	330 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	DPB4	Q04603	196 aa	Known RBP	4.14	□□□□□ -1.75
SPB4	YFL002C	DCI1	Q08558	271 aa		4.14	□□□□□ -1.75
SPB4	YFL002C	YML133C	Q03099	1374 aa		4.13	□□□□□ -1.75
SPB4	YFL002C	YLL067C	Q07888	1374 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 32.1 ms