RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	OCA6	Q12454	224 aa		6.06	□□□□□ -1.44
RPT3	YDR394W	CAR1	P00812	333 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	RPL24A	P04449	155 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	TSA1	P34760	196 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	HES1	P35843	434 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	UIP5	P36137	443 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	ECM13	P38195	257 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	YBR259W	P38338	688 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	SEC31	P38968	1273 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	VAC8	P39968	578 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	GVP36	P40531	326 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	DLD2	P46681	530 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	FMP33	P46998	180 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	TRF5	P48561	642 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	PEX8	P53248	589 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	VPS62	P53285	467 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	GND2	P53319	492 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	CUS2	P53830	285 aa	Predicted RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	YDR476C	Q03362	224 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	ECM22	Q05958	814 aa	Predicted RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	ENT4	Q07872	247 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	PGC1	Q08959	321 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	LEA1	Q08963	238 aa	Predicted RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	ALG6	Q12001	544 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	CHS5	Q12114	671 aa	Known RBP	6.05	□□□□□ -1.44
RPT3	YDR394W	RUP1	Q12242	671 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	LCB4	Q12246	624 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	ATG34	Q12292	412 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	WHI5	Q12416	295 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	YDR524C-B	Q3E6R4	66 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	AFI1	Q99222	893 aa		6.05	□□□□□ -1.44
RPT3	YDR394W	COX5A	P00424	153 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	ERG20	P08524	352 aa	Known RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	NMT1	P14743	455 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	URA4	P20051	364 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	SEC15	P22224	910 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	TRX2	P22803	104 aa	Known RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	AEP1	P32493	518 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	6.04	□□□□□ -1.44	not detected
RPT3	YDR394W	LIP5	P32875	414 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	SWE1	P32944	819 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	ARN1	P38731	627 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	SHU2	P38957	223 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	SEO1	P39709	593 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	MAM33	P40513	266 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	IST3	P40565	148 aa	Predicted RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	CNN1	P43618	361 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	MCM6	P53091	1017 aa	Known RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	STR3	P53101	465 aa	Known RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	COG2	P53271	262 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	SLM2	P53955	656 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	PET117	Q02771	107 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	TRS31	Q03337	283 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	YMR155W	Q03795	547 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	JIP5	Q06214	492 aa	Predicted RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	SEC10	Q06245	871 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	YDL121C	Q07541	149 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	PSR1	Q07800	427 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	6.04	□□□□□ -1.44	not detected
RPT3	YDR394W	MCH5	Q08777	521 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	APC9	Q12107	265 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	HSH49	Q99181	213 aa	Predicted RBP	6.04	□□□□□ -1.44
RPT3	YDR394W	ECM29	P38737	1868 aa		6.04	□□□□□ -1.44
RPT3	YDR394W	RIF1	P29539	1916 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	6.03	□□□□□ -1.44	not detected
RPT3	YDR394W	YCR090C	P25654	182 aa	Known RBP	6.03	□□□□□ -1.44
RPT3	YDR394W	TFC1	P32367	649 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	PAH1	P32567	862 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	WHI3	P34761	661 aa	Known RBP	6.03	□□□□□ -1.44
RPT3	YDR394W	TOM20	P35180	183 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	YBR056W	P38081	501 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	MAK5	P38112	773 aa	Predicted RBP	6.03	□□□□□ -1.44
RPT3	YDR394W	HAT2	P39984	401 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	SEC26	P41810	973 aa	Known RBP	6.03	□□□□□ -1.44
RPT3	YDR394W	GCD14	P46959	383 aa	Predicted RBP	6.03	□□□□□ -1.44
RPT3	YDR394W	EFM6	P53970	246 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	SPP2	Q02521	185 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	CSN9	Q03981	162 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	GGA1	Q06336	557 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	BRE4	Q07660	1125 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	LDB18	Q07887	179 aa		6.03	□□□□□ -1.44
RPT3	YDR394W	ATP2	P00830	511 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	AAT2	P23542	418 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	GFD2	P25370	566 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	ZIP1	P31111	875 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	AST1	P35183	429 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	ASK1	P35734	292 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	ADD66	P36040	267 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	YKR051W	P36142	418 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	SEA4	P38164	1038 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	YBR225W	P38321	900 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	SEC27	P41811	889 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	BUD13	P46947	266 aa	Predicted RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	AIF1	P52923	378 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	TAN1	P53072	289 aa	Predicted RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	PRO2	P54885	456 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	LSM3	P57743	89 aa	Known RBP	6.02	□□□□□ -1.45
RPT3	YDR394W	NUP100	Q02629	959 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	RPM2	Q02773	1202 aa		6.02	□□□□□ -1.45
RPT3	YDR394W	FMP30	Q02883	468 aa		6.02	□□□□□ -1.45

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms