RNA–Protein interactions for RNA: ENST00000467553.2

CCHCR1-211, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 589 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-211ENST00000467553 TFAP4Q01664 338 aa16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 LRRC26Q2I0M4 334 aa16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 FAM47AQ5JRC9 791 aa16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 CENPQQ7L2Z9 268 aaPredicted RBP16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 MAML3Q96JK9 1138 aa16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 CLIP2Q9UDT6 1046 aa16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 COL11A1P12107 1806 aaPredicted RBP16.66■□□□□ 0.26
CCHCR1-211ENST00000467553 KBTBD13C9JR72 458 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 KCTD2Q14681 263 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 PPP4R3BQ5MIZ7 849 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 SAMD1Q6SPF0 538 aaPredicted RBP16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 MSL3Q8N5Y2 521 aaKnown RBP16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 TRPV1Q8NER1 839 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 MKL1Q969V6 931 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 CCDC136Q96JN2 1154 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 MMP19Q99542 508 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 UBE2OQ9C0C9 1292 aaKnown RBP16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 TOMM22Q9NS69 142 aa16.65■□□□□ 0.26
CCHCR1-211ENST00000467553 SYN1P17600 705 aa16.64■□□□□ 0.25
CCHCR1-211ENST00000467553 HAND2P61296 217 aa16.64■□□□□ 0.25
CCHCR1-211ENST00000467553 PRPF38AQ8NAV1 312 aaKnown RBP16.64■□□□□ 0.25
CCHCR1-211ENST00000467553 PRKAG2Q9UGJ0 569 aa16.64■□□□□ 0.25
CCHCR1-211ENST00000467553 ANAPC4Q9UJX5 808 aa16.64■□□□□ 0.25
CCHCR1-211ENST00000467553 TSPY2A6NKD2 308 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 F5H6K3 240 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 ATP2A1O14983 1001 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 RANBP6O60518 1105 aaKnown RBP16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 FDX1P10109 184 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 KLRC3Q07444 240 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 RRP12Q5JTH9 1297 aaKnown RBP16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 C1orf53Q5VUE5 145 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 SKAP1Q86WV1 359 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 REPS2Q8NFH8 660 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 NEDD1Q8NHV4 660 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 CEP95Q96GE4 821 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 LBHD1Q9BQE6 289 aaPredicted RBP16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 SLF1Q9BQI6 1058 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 TEX13BQ9BXU2 312 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 ZNF214Q9UL59 606 aaPredicted RBP16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 TACC3Q9Y6A5 838 aa16.63■□□□□ 0.25
CCHCR1-211ENST00000467553 IGKV6D-41A0A0C4DH26 115 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 CENPBP07199 599 aaPredicted RBP16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 ZNF792Q3KQV3 632 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 FAM83BQ5T0W9 1011 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 TINF2Q9BSI4 451 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 FBXO28Q9NVF7 368 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 MTMR4Q9NYA4 1195 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 PLXNA1Q9UIW2 1896 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 MYH4Q9Y623 1939 aa16.62■□□□□ 0.25
CCHCR1-211ENST00000467553 SOX1O00570 391 aaPredicted RBP16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 ZNF213O14771 459 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 ZBED4O75132 1171 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 TTLL1O95922 423 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 CHMLP26374 656 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 SNX17Q15036 470 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 SLC39A5Q6ZMH5 540 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 GMCL1P1Q8NEA9 526 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 RUFY2Q8WXA3 655 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 FEM1BQ9UK73 627 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 PLIN4Q96Q06 1357 aa16.61■□□□□ 0.25
CCHCR1-211ENST00000467553 ORC4O43929 436 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 NDUFB10O96000 172 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 RARBP10826 455 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 OAZ1P54368 228 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 RTP1P59025 263 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 GJC2Q5T442 439 aaPredicted RBP16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 MFSD6Q6ZSS7 791 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 RNF180Q86T96 592 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 CHMP4CQ96CF2 233 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 LRCH3Q96II8 777 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 IL25Q9H293 177 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 FBXO40Q9UH90 709 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 CTDP1Q9Y5B0 961 aaPredicted RBP16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 ZMYM6O95789 1325 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 SYNGAP1Q96PV0 1343 aa16.6■□□□□ 0.25
CCHCR1-211ENST00000467553 SMCHD1A6NHR9 2005 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 NMT2O60551 498 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 FGRP09769 529 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 AKR1A1P14550 325 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 ATN1P54259 1190 aaPredicted RBP16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 LRRC41Q15345 812 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 AKNAD1Q5T1N1 836 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 ZNF467Q7Z7K2 595 aaPredicted RBP16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 LRRC47Q8N1G4 583 aaKnown RBP16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 NUP88Q99567 741 aaPredicted RBP16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 DSCC1Q9BVC3 393 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 STX8Q9UNK0 236 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 CNPY2Q9Y2B0 182 aa16.59■□□□□ 0.25
CCHCR1-211ENST00000467553 COL6A3P12111 3177 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 PRAMEF19Q5SWL8 479 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 SNRNP48Q6IEG0 339 aaKnown RBP16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 MAMDC4Q6UXC1 1216 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 CHST13Q8NET6 341 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 DDX11Q96FC9 970 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 TSEN34Q9BSV6 310 aaKnown RBP16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 SLC38A10Q9HBR0 1119 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 XPNPEP3Q9NQH7 507 aa16.58■□□□□ 0.24
CCHCR1-211ENST00000467553 IL17RBQ9NRM6 502 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms