RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	SCO2	P38072	301 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	SLZ1	P40167	298 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	CTK2	P46962	323 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	OPY2	Q06810	360 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	YOR111W	Q99210	232 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	AIM17	P23180	465 aa	Known RBP	3.78	□□□□□ -1.8
CUP9	YPL177C	TKL1	P23254	680 aa	Known RBP	3.78	□□□□□ -1.8
CUP9	YPL177C	STE50	P25344	346 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	ESL2	P36168	1195 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	YEL068C	P39977	110 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	LYS14	P40971	790 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	SIP4	P46954	829 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	ASI1	P54074	624 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	MUB1	Q03162	620 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	YLR112W	Q12130	139 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	NBP2	Q12163	236 aa		3.78	□□□□□ -1.8
CUP9	YPL177C	RAP1	P11938	827 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	GND1	P38720	489 aa	Known RBP	3.77	□□□□□ -1.81
CUP9	YPL177C	TOM71	P38825	639 aa	Known RBP	3.77	□□□□□ -1.81
CUP9	YPL177C	UBP8	P50102	471 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	YTP1	P53584	459 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	BSC5	P53755	489 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	VTC3	Q02725	835 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	RAD30	Q04049	632 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	SWF1	Q04629	336 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	SKG3	Q06315	1026 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	SNA4	Q07549	140 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	RIX7	Q07844	837 aa	Known RBP	3.77	□□□□□ -1.81
CUP9	YPL177C	BUD21	Q08492	214 aa	Predicted RBP	3.77	□□□□□ -1.81
CUP9	YPL177C	YDR056C	Q12025	205 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.77	□□□□□ -1.81	not detected
CUP9	YPL177C	SKM1	Q12469	655 aa		3.77	□□□□□ -1.81
CUP9	YPL177C	TOP1	P04786	769 aa		3.76	□□□□□ -1.81
CUP9	YPL177C	HXK2	P04807	486 aa	Known RBP	3.76	□□□□□ -1.81
CUP9	YPL177C	RPL42A	P0CX27	106 aa	Known RBP	3.76	□□□□□ -1.81
CUP9	YPL177C	RPL42B	P0CX28	106 aa	Known RBP	3.76	□□□□□ -1.81
CUP9	YPL177C	VPS25	P47142	202 aa		3.76	□□□□□ -1.81
CUP9	YPL177C	AAD10	P47182	288 aa		3.76	□□□□□ -1.81
CUP9	YPL177C	ATX2	Q12067	313 aa		3.76	□□□□□ -1.81
CUP9	YPL177C	ATG9	Q12142	997 aa		3.76	□□□□□ -1.81
CUP9	YPL177C	CDC24	P11433	854 aa	Predicted RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	CHS3	P29465	1165 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	SAC1	P32368	623 aa	Known RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	BUR6	P40096	142 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	YIR016W	P40572	265 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	RPN11	P43588	306 aa	Known RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	ARC1	P46672	376 aa	Known RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	RPS7B	P48164	190 aa	Known RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	NNF2	P53253	936 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	IST1	P53843	298 aa	Predicted RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	YSA1	Q01976	231 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	CAC2	Q04199	468 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	YTH1	Q06102	208 aa	Predicted RBP	3.75	□□□□□ -1.81
CUP9	YPL177C	YDL121C	Q07541	149 aa		3.75	□□□□□ -1.81
CUP9	YPL177C	CDC16	P09798	840 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	YIL152W	P40455	235 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	MDV1	P47025	714 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	DPB11	P47027	764 aa	Predicted RBP	3.74	□□□□□ -1.81
CUP9	YPL177C	LYS4	P49367	693 aa	Predicted RBP	3.74	□□□□□ -1.81
CUP9	YPL177C	POS5	Q06892	414 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	GSH2	Q08220	491 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	NKP1	Q12493	238 aa		3.74	□□□□□ -1.81
CUP9	YPL177C	SAN1	P22470	610 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	GFD2	P25370	566 aa	Known RBP	3.73	□□□□□ -1.81
CUP9	YPL177C	MNN2	P38069	597 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	MAL33	P38157	468 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	RFC1	P38630	861 aa	Known RBP	3.73	□□□□□ -1.81
CUP9	YPL177C	RTS1	P38903	757 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	VRG4	P40107	337 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	PKP1	P40530	394 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	HXT9	P40885	567 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	SGF73	P53165	657 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	INA17	Q02888	182 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	IZH1	Q03419	316 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	YKU80	Q04437	629 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	PSR1	Q07800	427 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	TCO89	Q08921	799 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	INP53	Q12271	1107 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	ENT1	Q12518	454 aa		3.73	□□□□□ -1.81
CUP9	YPL177C	RPL19A	P0CX82	189 aa	Known RBP	3.72	□□□□□ -1.81
CUP9	YPL177C	RPL19B	P0CX83	189 aa	Predicted RBP	3.72	□□□□□ -1.81
CUP9	YPL177C	AAC3	P18238	307 aa		3.72	□□□□□ -1.81
CUP9	YPL177C	PWP1	P21304	576 aa	Known RBP	3.72	□□□□□ -1.81
CUP9	YPL177C	CLB2	P24869	491 aa		3.72	□□□□□ -1.81
CUP9	YPL177C	LCB1	P25045	558 aa	Known RBP	3.72	□□□□□ -1.81
CUP9	YPL177C	LEU5	P38702	357 aa		3.72	□□□□□ -1.81
CUP9	YPL177C	STR3	P53101	465 aa	Known RBP	3.72	□□□□□ -1.81
CUP9	YPL177C	MAK10	Q02197	733 aa		3.72	□□□□□ -1.81
CUP9	YPL177C	CBP1	P07252	654 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	NOP1	P15646	327 aa	Known RBP	3.71	□□□□□ -1.82
CUP9	YPL177C	KAR3	P17119	729 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	YCK1	P23291	538 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	PRE8	P23639	250 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	PDB1	P32473	366 aa	Known RBP	3.71	□□□□□ -1.82
CUP9	YPL177C	PAH1	P32567	862 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	SNU114	P36048	1008 aa	Known RBP	3.71	□□□□□ -1.82
CUP9	YPL177C	ANS1	P38832	159 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	LCL3	P53153	274 aa		3.71	□□□□□ -1.82
CUP9	YPL177C	DUO1	P53168	247 aa	Known RBP	3.71	□□□□□ -1.82
CUP9	YPL177C	YMR178W	Q03219	274 aa	Known RBP	3.71	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms