RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YPL108WQ02872 168 aaPredicted RBP6.06□□□□□ -1.44
DEF1YKL054C ARR3Q06598 404 aa6.06□□□□□ -1.44
DEF1YKL054C PLP2Q12017 286 aa6.06□□□□□ -1.44
DEF1YKL054C PRS5Q12265 496 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C YPR053CQ6Q5F3 151 aa6.06□□□□□ -1.44
DEF1YKL054C GAL80P04387 435 aa6.05□□□□□ -1.44
DEF1YKL054C RPS4AP0CX35 261 aaKnown RBP6.05□□□□□ -1.44
DEF1YKL054C RPS4BP0CX36 261 aaKnown RBP6.05□□□□□ -1.44
DEF1YKL054C SFA1P32771 386 aa6.05□□□□□ -1.44
DEF1YKL054C CAB3P36076 571 aa6.05□□□□□ -1.44
DEF1YKL054C SLM4P38247 162 aa6.05□□□□□ -1.44
DEF1YKL054C NUP60P39705 539 aa6.05□□□□□ -1.44
DEF1YKL054C CTK2P46962 323 aa6.05□□□□□ -1.44
DEF1YKL054C PRP31P49704 494 aaPredicted RBP6.05□□□□□ -1.44
DEF1YKL054C REC102Q02721 264 aa6.05□□□□□ -1.44
DEF1YKL054C SFG1Q12507 346 aa6.05□□□□□ -1.44
DEF1YKL054C ADF1Q2V2Q1 113 aa6.05□□□□□ -1.44
DEF1YKL054C YML003WP0CF16 290 aa6.05□□□□□ -1.44
DEF1YKL054C SPS22P25380 463 aa6.05□□□□□ -1.44
DEF1YKL054C FAA1P30624 700 aaKnown RBP6.05□□□□□ -1.44
DEF1YKL054C HMX1P32339 317 aa6.05□□□□□ -1.44
DEF1YKL054C ELO3P40319 345 aa6.05□□□□□ -1.44
DEF1YKL054C LOC1P43586 204 aaPredicted RBP6.05□□□□□ -1.44
DEF1YKL054C ECM27P47144 725 aa6.05□□□□□ -1.44
DEF1YKL054C INA17Q02888 182 aa6.05□□□□□ -1.44
DEF1YKL054C MCM21Q06675 368 aa6.05□□□□□ -1.44
DEF1YKL054C MCA1Q08601 432 aa6.05□□□□□ -1.44
DEF1YKL054C GPN2Q08726 347 aaPredicted RBP6.05□□□□□ -1.44
DEF1YKL054C LYS21Q12122 440 aaKnown RBP6.05□□□□□ -1.44
DEF1YKL054C ERG27Q12452 347 aaKnown RBP6.05□□□□□ -1.44
DEF1YKL054C SUP35P05453 685 aaKnown RBP6.04□□□□□ -1.44
DEF1YKL054C PIM1P36775 1133 aa6.04□□□□□ -1.44
DEF1YKL054C SEC24P40482 926 aaKnown RBP6.04□□□□□ -1.44
DEF1YKL054C SIZ1Q04195 904 aa6.04□□□□□ -1.44
DEF1YKL054C GSH2Q08220 491 aa6.04□□□□□ -1.44
DEF1YKL054C SGO1Q08490 590 aa6.04□□□□□ -1.44
DEF1YKL054C PFK27Q12471 397 aaPredicted RBP6.04□□□□□ -1.44
DEF1YKL054C ARD1P07347 238 aaPredicted RBP6.03□□□□□ -1.44
DEF1YKL054C GAL7P08431 366 aa6.03□□□□□ -1.44
DEF1YKL054C GCD1P09032 578 aaPredicted RBP6.03□□□□□ -1.44
DEF1YKL054C PUT4P15380 627 aa6.03□□□□□ -1.44
DEF1YKL054C RNR1P21524 888 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C STE14P32584 239 aa6.03□□□□□ -1.44
DEF1YKL054C YME2P32843 850 aa6.03□□□□□ -1.44
DEF1YKL054C MRP4P32902 394 aa6.03□□□□□ -1.44
DEF1YKL054C ALG5P40350 334 aa6.03□□□□□ -1.44
DEF1YKL054C DCP2P53550 970 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C ASI2P53895 289 aa6.03□□□□□ -1.44
DEF1YKL054C YNL050CP53952 270 aa6.03□□□□□ -1.44
DEF1YKL054C PPM1Q04081 328 aa6.03□□□□□ -1.44
DEF1YKL054C CUR1Q06469 252 aa6.03□□□□□ -1.44
DEF1YKL054C AVL9Q12500 764 aa6.03□□□□□ -1.44
DEF1YKL054C RPL6BP05739 176 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C TUB3P09734 445 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C TCD2P36101 447 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C TIF5P38431 405 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C YHL012WP38709 493 aa6.03□□□□□ -1.44
DEF1YKL054C YHL017WP38745 532 aa6.03□□□□□ -1.44
DEF1YKL054C PEX18P38855 283 aa6.03□□□□□ -1.44
DEF1YKL054C AKR1P39010 764 aa6.03□□□□□ -1.44
DEF1YKL054C HXT14P42833 540 aa6.03□□□□□ -1.44
DEF1YKL054C INP52P50942 1183 aa6.03□□□□□ -1.44
DEF1YKL054C AQR1P53943 586 aa6.03□□□□□ -1.44
DEF1YKL054C RPL6AQ02326 176 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C CLU1Q03690 1277 aaKnown RBP6.03□□□□□ -1.44
DEF1YKL054C YDR239CQ03780 787 aa6.03□□□□□ -1.44
DEF1YKL054C YVC1Q12324 675 aa6.03□□□□□ -1.44
DEF1YKL054C HIP1P06775 603 aa6.02□□□□□ -1.45
DEF1YKL054C ERG20P08524 352 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C PRP6P19735 899 aaPredicted RBP6.02□□□□□ -1.45
DEF1YKL054C PRE10P21242 288 aaKnown RBP RIP-Chip data6.02□□□□□ -1.45not detected
DEF1YKL054C IDH2P28241 369 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C DCG1P32460 244 aa6.02□□□□□ -1.45
DEF1YKL054C SRB5P32585 307 aa6.02□□□□□ -1.45
DEF1YKL054C GTS1P40956 396 aa6.02□□□□□ -1.45
DEF1YKL054C NCS6P53088 359 aa6.02□□□□□ -1.45
DEF1YKL054C YGR130CP53278 816 aa6.02□□□□□ -1.45
DEF1YKL054C LSC1P53598 329 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C VTA1Q06263 330 aa6.02□□□□□ -1.45
DEF1YKL054C TRE1Q08919 783 aa6.02□□□□□ -1.45
DEF1YKL054C POM34Q12445 299 aa6.02□□□□□ -1.45
DEF1YKL054C TFB5Q3E7C1 72 aaPredicted RBP6.02□□□□□ -1.45
DEF1YKL054C TDH1P00360 332 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C CBP2P03874 630 aaPredicted RBP6.02□□□□□ -1.45
DEF1YKL054C CLC1P17891 233 aa6.02□□□□□ -1.45
DEF1YKL054C TIF3P34167 436 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C TAT1P38085 619 aa6.02□□□□□ -1.45
DEF1YKL054C SIC1P38634 284 aa6.02□□□□□ -1.45
DEF1YKL054C WSS1P38838 269 aa6.02□□□□□ -1.45
DEF1YKL054C MAF1P41910 395 aa6.02□□□□□ -1.45
DEF1YKL054C MTG1Q03151 367 aaPredicted RBP6.02□□□□□ -1.45
DEF1YKL054C CRF1Q04930 467 aa6.02□□□□□ -1.45
DEF1YKL054C WHI4Q07655 649 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C HRP1Q99383 534 aaKnown RBP6.02□□□□□ -1.45
DEF1YKL054C UBA1P22515 1024 aaKnown RBP6.01□□□□□ -1.45
DEF1YKL054C LRE1P25579 583 aaKnown RBP6.01□□□□□ -1.45
DEF1YKL054C YIH1P25637 258 aa6.01□□□□□ -1.45
DEF1YKL054C DPH5P32469 300 aaPredicted RBP6.01□□□□□ -1.45
DEF1YKL054C MNN2P38069 597 aa6.01□□□□□ -1.45
DEF1YKL054C RFC5P38251 354 aa6.01□□□□□ -1.45
Retrieved 100 of 5,963 RNA–protein pairs in 46.2 ms