RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W IMP2'P32351 346 aa2.72□□□□□ -1.97
VPS41YDR080W BRN1P38170 754 aa2.72□□□□□ -1.97
VPS41YDR080W BAT1P38891 393 aaKnown RBP2.72□□□□□ -1.97
VPS41YDR080W GZF3P42944 551 aaKnown RBP2.72□□□□□ -1.97
VPS41YDR080W SCD6P45978 349 aaKnown RBP RIP-Chip data2.72□□□□□ -1.97 RIP-Chip
VPS41YDR080W UME1Q03010 460 aa2.72□□□□□ -1.97
VPS41YDR080W YMR210WQ03649 449 aa2.72□□□□□ -1.97
VPS41YDR080W ARG7Q04728 441 aa2.72□□□□□ -1.97
VPS41YDR080W CLP1Q08685 445 aaPredicted RBP2.72□□□□□ -1.97
VPS41YDR080W SEC65P29478 273 aa2.72□□□□□ -1.97
VPS41YDR080W SHE3P38272 425 aaKnown RBP2.72□□□□□ -1.97
VPS41YDR080W PMT6P42934 759 aa2.72□□□□□ -1.97
VPS41YDR080W CEG1Q01159 459 aaPredicted RBP2.72□□□□□ -1.97
VPS41YDR080W APC5Q08683 685 aa2.72□□□□□ -1.97
VPS41YDR080W CTF3Q12748 733 aa2.72□□□□□ -1.97
VPS41YDR080W VAS1P07806 1104 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W RIP1P08067 215 aa2.71□□□□□ -1.98
VPS41YDR080W MATALPHA2P0CY08 210 aa2.71□□□□□ -1.98
VPS41YDR080W HMLALPHA2P0CY09 210 aa2.71□□□□□ -1.98
VPS41YDR080W SPO11P23179 398 aa2.71□□□□□ -1.98
VPS41YDR080W SWI4P25302 1093 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W GAC1P28006 793 aa2.71□□□□□ -1.98
VPS41YDR080W EHT1P38295 451 aa2.71□□□□□ -1.98
VPS41YDR080W STT3P39007 718 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W OSW5P40219 148 aa2.71□□□□□ -1.98
VPS41YDR080W YJR061WP40355 935 aa2.71□□□□□ -1.98
VPS41YDR080W YGR153WP48238 217 aa2.71□□□□□ -1.98
VPS41YDR080W FLC3P53121 802 aa2.71□□□□□ -1.98
VPS41YDR080W YGL117WP53133 265 aa2.71□□□□□ -1.98
VPS41YDR080W VTC3Q02725 835 aa2.71□□□□□ -1.98
VPS41YDR080W YDR179W-AQ03983 463 aa2.71□□□□□ -1.98
VPS41YDR080W VBA4Q04602 768 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W SMD2Q06217 110 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W ARR3Q06598 404 aa2.71□□□□□ -1.98
VPS41YDR080W YCG1Q06680 1035 aa2.71□□□□□ -1.98
VPS41YDR080W YPQ1Q12010 308 aa2.71□□□□□ -1.98
VPS41YDR080W STE12P13574 688 aa2.71□□□□□ -1.98
VPS41YDR080W PTP1P25044 335 aa2.71□□□□□ -1.98
VPS41YDR080W ILV6P25605 309 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W DSS4P32601 143 aa2.71□□□□□ -1.98
VPS41YDR080W WSC4P38739 605 aa2.71□□□□□ -1.98
VPS41YDR080W MED6P38782 295 aa2.71□□□□□ -1.98
VPS41YDR080W APM1Q00776 475 aaPredicted RBP2.71□□□□□ -1.98
VPS41YDR080W YSH1Q06224 779 aaPredicted RBP2.71□□□□□ -1.98
VPS41YDR080W SLK19Q08581 821 aaKnown RBP2.71□□□□□ -1.98
VPS41YDR080W SMC6Q12749 1114 aa2.71□□□□□ -1.98
VPS41YDR080W RPN13O13563 156 aa2.7□□□□□ -1.98
VPS41YDR080W TMN3P40071 706 aa2.7□□□□□ -1.98
VPS41YDR080W PRM2P40534 656 aa2.7□□□□□ -1.98
VPS41YDR080W PXA1P41909 870 aa2.7□□□□□ -1.98
VPS41YDR080W YGR266WP53326 701 aa2.7□□□□□ -1.98
VPS41YDR080W CWC21Q03375 135 aaKnown RBP2.7□□□□□ -1.98
VPS41YDR080W HER2Q03557 464 aa2.7□□□□□ -1.98
VPS41YDR080W HRT3Q12347 344 aa2.7□□□□□ -1.98
VPS41YDR080W ALG1P16661 449 aa2.7□□□□□ -1.98
VPS41YDR080W TKL2P33315 681 aa2.7□□□□□ -1.98
VPS41YDR080W TCD2P36101 447 aaKnown RBP2.7□□□□□ -1.98
VPS41YDR080W SIP3P38717 1229 aa2.7□□□□□ -1.98
VPS41YDR080W HEM14P40012 539 aa2.7□□□□□ -1.98
VPS41YDR080W YIL161WP40449 235 aaKnown RBP2.7□□□□□ -1.98
VPS41YDR080W ASG1P40467 964 aa2.7□□□□□ -1.98
VPS41YDR080W SHQ1P40486 507 aaPredicted RBP2.7□□□□□ -1.98
VPS41YDR080W THI6P41835 540 aa2.7□□□□□ -1.98
VPS41YDR080W MNN11P46985 422 aaKnown RBP2.7□□□□□ -1.98
VPS41YDR080W NPA3P47122 385 aa2.7□□□□□ -1.98
VPS41YDR080W HLJ1P48353 224 aa2.7□□□□□ -1.98
VPS41YDR080W RTC4P53850 401 aa2.7□□□□□ -1.98
VPS41YDR080W PGA2P53903 129 aa2.7□□□□□ -1.98
VPS41YDR080W RSM10Q03201 203 aa2.7□□□□□ -1.98
VPS41YDR080W UFO1Q04511 668 aa2.7□□□□□ -1.98
VPS41YDR080W YOR389WQ08912 624 aa2.7□□□□□ -1.98
VPS41YDR080W YPL278CQ08990 100 aa2.7□□□□□ -1.98
VPS41YDR080W ASP3-2P0CX77 362 aa2.7□□□□□ -1.98
VPS41YDR080W ASP3-3P0CX78 362 aa2.7□□□□□ -1.98
VPS41YDR080W ASP3-4P0CX79 362 aa2.7□□□□□ -1.98
VPS41YDR080W ASP3-1P0CZ17 362 aa2.7□□□□□ -1.98
VPS41YDR080W NAT1P12945 854 aaKnown RBP2.7□□□□□ -1.98
VPS41YDR080W YPT10P38146 199 aa2.7□□□□□ -1.98
VPS41YDR080W PMC1P38929 1173 aaPredicted RBP2.7□□□□□ -1.98
VPS41YDR080W TAF4P50105 388 aa2.7□□□□□ -1.98
VPS41YDR080W GPM2Q12008 311 aa2.7□□□□□ -1.98
VPS41YDR080W ACO1P19414 778 aaKnown RBP RIP-Chip data2.69□□□□□ -1.98not detected
VPS41YDR080W SRX1P36077 127 aa2.69□□□□□ -1.98
VPS41YDR080W AIM23P47015 356 aa2.69□□□□□ -1.98
VPS41YDR080W YGR054WP53235 642 aaKnown RBP2.69□□□□□ -1.98
VPS41YDR080W CSL4P53859 292 aaPredicted RBP2.69□□□□□ -1.98
VPS41YDR080W FDC1Q03034 503 aa2.69□□□□□ -1.98
VPS41YDR080W EFR3Q03653 782 aaKnown RBP2.69□□□□□ -1.98
VPS41YDR080W SEG1Q04279 960 aa2.69□□□□□ -1.98
VPS41YDR080W YTM1Q12024 460 aaPredicted RBP2.69□□□□□ -1.98
VPS41YDR080W ZPS1Q12512 249 aa2.69□□□□□ -1.98
VPS41YDR080W WBP1P33767 430 aaKnown RBP2.69□□□□□ -1.98
VPS41YDR080W UBP13P38187 747 aa2.69□□□□□ -1.98
VPS41YDR080W ECM13P38195 257 aa2.69□□□□□ -1.98
VPS41YDR080W FHL1P39521 936 aa2.69□□□□□ -1.98
VPS41YDR080W KAP123P40069 1113 aaKnown RBP2.69□□□□□ -1.98
VPS41YDR080W YGL036WP53185 909 aaPredicted RBP2.69□□□□□ -1.98
VPS41YDR080W ARK1P53974 638 aa2.69□□□□□ -1.98
VPS41YDR080W UTP14Q04500 899 aaKnown RBP2.69□□□□□ -1.98
VPS41YDR080W SHS1Q07657 551 aa2.69□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 26.2 ms