RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PSMD14O00487 310 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 LILRB5O75023 590 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 RPS12P25398 132 aaKnown RBP8.79□□□□□ -1
VPS13A-201ENST00000355766 KIF4BQ2VIQ3 1234 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 ALDH1L2Q3SY69 923 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 PARP10Q53GL7 1025 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 NOM1Q5C9Z4 860 aaKnown RBP8.79□□□□□ -1
VPS13A-201ENST00000355766 MCM10Q7L590 875 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 PPP1R42Q7Z4L9 355 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 SP8Q8IXZ3 490 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 Q8N3U1 123 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 CDCA5Q96FF9 252 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 CHMP4AQ9BY43 222 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 VRTNQ9H8Y1 702 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 SLC6A14Q9UN76 642 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 RRP7AQ9Y3A4 280 aaKnown RBP8.79□□□□□ -1
VPS13A-201ENST00000355766 KIF16BQ96L93 1317 aa8.79□□□□□ -1
VPS13A-201ENST00000355766 NUP98P52948 1817 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 TGFBR3LH3BV60 316 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 BBOX1O75936 387 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 TBC1D8O95759 1140 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 FKBP1BP68106 108 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 GRIK4Q16099 956 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 RTF1Q92541 710 aaKnown RBP8.78□□□□□ -1
VPS13A-201ENST00000355766 EFCC1Q9HA90 598 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 HTTP42858 3142 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 AKAP11Q9UKA4 1901 aa8.78□□□□□ -1
VPS13A-201ENST00000355766 DDX60Q8IY21 1712 aaKnown RBP8.77□□□□□ -1
VPS13A-201ENST00000355766 RTL9Q8NET4 1388 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 GRNP28799 593 aaKnown RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 RARSP54136 660 aaKnown RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 GRAPQ13588 217 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 RSPO4Q2I0M5 234 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 SLC10A5Q5PT55 438 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 GRAPLQ8TC17 118 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 DBNDD1Q9H9R9 158 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 DNAJB12Q9NXW2 375 aaKnown RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 KLK14Q9P0G3 267 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 ZNF609O15014 1411 aa8.77□□□□□ -1.01
VPS13A-201ENST00000355766 ASTN2O75129 1339 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-201ENST00000355766 MKI67P46013 3256 aaKnown RBP8.76□□□□□ -1.01
VPS13A-201ENST00000355766 KDM3BQ7LBC6 1761 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 CHL1O00533 1208 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 MYL6BP14649 208 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 NFKB1P19838 968 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 CCINQ13939 588 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 DCTN1Q14203 1278 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 DDX46Q7L014 1031 aaKnown RBP8.76□□□□□ -1.01
VPS13A-201ENST00000355766 TMC4Q7Z404 712 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 NUDT8Q8WV74 236 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 PNMA5Q96PV4 448 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 UTP14AQ9BVJ6 771 aaKnown RBP8.76□□□□□ -1.01
VPS13A-201ENST00000355766 JPH1Q9HDC5 661 aaPredicted RBP8.76□□□□□ -1.01
VPS13A-201ENST00000355766 TPSG1Q9NRR2 321 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 LAMB2P55268 1798 aa8.76□□□□□ -1.01
VPS13A-201ENST00000355766 IPO8O15397 1037 aaKnown RBP8.75□□□□□ -1.01
VPS13A-201ENST00000355766 ECE2O60344 883 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 FKTNO75072 461 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 NKAPLQ5M9Q1 402 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 ANGEL2Q5VTE6 544 aaKnown RBP8.75□□□□□ -1.01
VPS13A-201ENST00000355766 ARHGAP45Q92619 1136 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 NACC1Q96RE7 527 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 NAGPAQ9UK23 515 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 ANKRD36CQ5JPF3 1778 aa8.75□□□□□ -1.01
VPS13A-201ENST00000355766 RBBP6Q7Z6E9 1792 aaKnown RBP8.75□□□□□ -1.01
VPS13A-201ENST00000355766 A0A0A0MRY4 1105 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 HOXB7P09629 217 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 WEE1P30291 646 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 INPP5BP32019 993 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 TM4SF4P48230 202 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 SREBF2Q12772 1141 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 TAF7Q15545 349 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-201ENST00000355766 INTS3Q68E01 1043 aaKnown RBP8.74□□□□□ -1.01
VPS13A-201ENST00000355766 PSAPL1Q6NUJ1 521 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 CHMP4BQ9H444 224 aaKnown RBP8.74□□□□□ -1.01
VPS13A-201ENST00000355766 PITPNM2Q9BZ72 1349 aa8.74□□□□□ -1.01
VPS13A-201ENST00000355766 HCLS1P14317 486 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-201ENST00000355766 IDH3AP50213 366 aa8.73□□□□□ -1.01
VPS13A-201ENST00000355766 AFF1P51825 1210 aaKnown RBP8.73□□□□□ -1.01
VPS13A-201ENST00000355766 ZNF280AP59817 542 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-201ENST00000355766 EIF4A1P60842 406 aaKnown RBP8.73□□□□□ -1.01
VPS13A-201ENST00000355766 EXOSC9Q06265 439 aaKnown RBP8.73□□□□□ -1.01
VPS13A-201ENST00000355766 MOB2Q70IA6 237 aa8.73□□□□□ -1.01
VPS13A-201ENST00000355766 LRP10Q7Z4F1 713 aa8.73□□□□□ -1.01
VPS13A-201ENST00000355766 KCNQ5Q9NR82 932 aa8.73□□□□□ -1.01
VPS13A-201ENST00000355766 MIS18AQ9NYP9 233 aa8.73□□□□□ -1.01
VPS13A-201ENST00000355766 COL4A1P02462 1669 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 CACNA1FO60840 1977 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 VIL1P09327 827 aaKnown RBP8.72□□□□□ -1.01
VPS13A-201ENST00000355766 SELPP16109 830 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 ZKSCAN2Q63HK3 967 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 OTOP1Q7RTM1 612 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 NLRP10Q86W26 655 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 TSR2Q969E8 191 aaKnown RBP8.72□□□□□ -1.01
VPS13A-201ENST00000355766 EYA3Q99504 573 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 POLLQ9UGP5 575 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 TRIM17Q9Y577 477 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 SH3TC1Q8TE82 1336 aa8.72□□□□□ -1.01
VPS13A-201ENST00000355766 BRCA2P51587 3418 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms