RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	ADE17	P38009	592 aa	Known RBP	3.87	□□□□□ -1.79
CUP9	YPL177C	FLO5	P38894	1075 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	YER010C	P40011	234 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	RIC1	P40395	1056 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	PFK26	P40433	827 aa	Known RBP	3.87	□□□□□ -1.79
CUP9	YPL177C	SWP82	P43554	623 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	COP1	P53622	1201 aa	Known RBP	3.87	□□□□□ -1.79
CUP9	YPL177C	YNR061C	P53747	219 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	PDR8	Q06149	701 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	YER145C-A	A0A023PYF4	145 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	SRP54	P20424	541 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	YCR006C	P25350	157 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	YMR124W	P39523	943 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	KAP123	P40069	1113 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	ASG1	P40467	964 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	YIL024C	P40543	189 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	YJL107C	P42947	387 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	DCP2	P53550	970 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	FCP1	Q03254	732 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	GET3	Q12154	354 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	ERG27	Q12452	347 aa	Known RBP	3.86	□□□□□ -1.79
CUP9	YPL177C	YOR019W	Q99248	730 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	VCX1	Q99385	411 aa		3.86	□□□□□ -1.79
CUP9	YPL177C	SRB5	P32585	307 aa		3.85	□□□□□ -1.79
CUP9	YPL177C	NTR2	P36118	322 aa	Predicted RBP	3.85	□□□□□ -1.79
CUP9	YPL177C	ARN1	P38731	627 aa		3.85	□□□□□ -1.79
CUP9	YPL177C	PHM8	P40025	321 aa		3.85	□□□□□ -1.79
CUP9	YPL177C	PSK2	Q08217	1101 aa		3.85	□□□□□ -1.79
CUP9	YPL177C	YOL087C	Q99247	1116 aa		3.85	□□□□□ -1.79
CUP9	YPL177C	PET111	P08468	800 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	MRP2	P10663	115 aa	Predicted RBP	3.84	□□□□□ -1.79
CUP9	YPL177C	YCP4	P25349	247 aa	Known RBP	3.84	□□□□□ -1.79
CUP9	YPL177C	RER1	P25560	188 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	MGM1	P32266	881 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	SSH4	P32343	579 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	MRP20	P32387	263 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	TFC3	P34111	1160 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	LHS1	P36016	881 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	FMP10	P40098	244 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	VPS4	P52917	437 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	CBK1	P53894	756 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	RRI1	Q12468	440 aa		3.84	□□□□□ -1.79
CUP9	YPL177C	CHO1	P08456	276 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	RPB2	P08518	1224 aa	Known RBP	3.83	□□□□□ -1.8
CUP9	YPL177C	GPA1	P08539	472 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	MCM10	P32354	571 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	OCT1	P35999	772 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	VID27	P40157	782 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	DPH1	P40487	425 aa	Known RBP	3.83	□□□□□ -1.8
CUP9	YPL177C	CFD1	P40558	293 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	MEP3	P53390	489 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	RSM28	Q03430	361 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	ECM22	Q05958	814 aa	Predicted RBP	3.83	□□□□□ -1.8
CUP9	YPL177C	MCH4	Q08268	501 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	FRE3	Q08905	711 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	NUS1	Q12063	375 aa		3.83	□□□□□ -1.8
CUP9	YPL177C	CNA1	P23287	553 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	CBF2	P32504	956 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	SOF1	P33750	489 aa	Known RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	AAP1	P37898	856 aa	Known RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	KTR3	P38130	404 aa	Predicted RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	VPS41	P38959	992 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	SEC31	P38968	1273 aa	Known RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	YAT2	P40017	923 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	MRX1	P40050	688 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	SEC24	P40482	926 aa	Known RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	IME4	P41833	600 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	YGL036W	P53185	909 aa	Predicted RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	SVL3	Q03088	825 aa	Known RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	PFA5	Q03289	374 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	YMR018W	Q04364	514 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	MRPL1	Q04599	285 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	YLR455W	Q06188	304 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	PIG1	Q06216	648 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	GPN2	Q08726	347 aa	Predicted RBP	3.82	□□□□□ -1.8
CUP9	YPL177C	YLR049C	Q12110	428 aa		3.82	□□□□□ -1.8
CUP9	YPL177C	ATO2	P32907	282 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	ALY1	P36117	915 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	ECM10	P39987	644 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	TPA1	P40032	644 aa	Known RBP	3.81	□□□□□ -1.8
CUP9	YPL177C	YFR020W	P43600	232 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	RPL15B	P54780	204 aa	Predicted RBP	3.81	□□□□□ -1.8
CUP9	YPL177C	RCO1	Q04779	684 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	SRL1	Q08673	210 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	BUD7	Q08754	746 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	NDD1	Q08887	554 aa		3.81	□□□□□ -1.8
CUP9	YPL177C	FUM1	P08417	488 aa	Known RBP	3.8	□□□□□ -1.8
CUP9	YPL177C	YJR061W	P40355	935 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	YPT11	P48559	417 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	LYS20	P48570	428 aa	Known RBP	3.8	□□□□□ -1.8
CUP9	YPL177C	PIL1	P53252	339 aa	Known RBP	3.8	□□□□□ -1.8
CUP9	YPL177C	INN1	P53901	409 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	YNL144C	P53907	740 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	EAF7	P53911	425 aa	Known RBP	3.8	□□□□□ -1.8
CUP9	YPL177C	VIP1	Q06685	1146 aa	Known RBP	3.8	□□□□□ -1.8
CUP9	YPL177C	ENT4	Q07872	247 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	YOL159C	Q08300	171 aa		3.8	□□□□□ -1.8
CUP9	YPL177C	YBR085C-A	O43137	85 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	CDC15	P27636	974 aa		3.79	□□□□□ -1.8
CUP9	YPL177C	MUD2	P36084	527 aa	Known RBP	3.79	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms