RNA–Protein interactions for RNA: YLR147C

SMD3, Transcript of Core Sm protein Sm D3, yeast

Gene SMD3, Length 306 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMD3	YLR147C	RRT6	P53117	311 aa	Predicted RBP	4.24	□□□□□ -1.73
SMD3	YLR147C	LSC1	P53598	329 aa	Known RBP	4.24	□□□□□ -1.73
SMD3	YLR147C	BOP3	P53958	396 aa		4.24	□□□□□ -1.73
SMD3	YLR147C	CRN1	Q06440	651 aa		4.24	□□□□□ -1.73
SMD3	YLR147C	TMA16	Q08687	178 aa		4.24	□□□□□ -1.73
SMD3	YLR147C	PET111	P08468	800 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	STE50	P25344	346 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	YCR043C	P25361	127 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	LEU5	P38702	357 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	IES5	P40060	125 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	ASE1	P50275	885 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	PSP1	P50896	841 aa	Known RBP	4.23	□□□□□ -1.73
SMD3	YLR147C	SCS3	P53012	380 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	ASI1	P54074	624 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	NUP53	Q03790	475 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	MLH2	Q07980	695 aa		4.23	□□□□□ -1.73
SMD3	YLR147C	TPK1	P06244	397 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	NTR2	P36118	322 aa	Predicted RBP	4.22	□□□□□ -1.73
SMD3	YLR147C	AAP1	P37898	856 aa	Known RBP	4.22	□□□□□ -1.73
SMD3	YLR147C	TES1	P41903	349 aa	Known RBP	4.22	□□□□□ -1.73
SMD3	YLR147C	BNA1	P47096	177 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	VPS25	P47142	202 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	CTF18	P49956	741 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	YNR061C	P53747	219 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	YMR034C	Q05131	434 aa	Predicted RBP	4.22	□□□□□ -1.73
SMD3	YLR147C	CSR1	Q06705	408 aa	Known RBP	4.22	□□□□□ -1.73
SMD3	YLR147C	POS5	Q06892	414 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	DSE3	Q08729	430 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	BUD7	Q08754	746 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	YLR049C	Q12110	428 aa		4.22	□□□□□ -1.73
SMD3	YLR147C	SRB5	P32585	307 aa		4.21	□□□□□ -1.74
SMD3	YLR147C	XRS2	P33301	854 aa		4.21	□□□□□ -1.74
SMD3	YLR147C	ARC40	P38328	384 aa	Known RBP	4.21	□□□□□ -1.74
SMD3	YLR147C	SEC31	P38968	1273 aa	Known RBP	4.21	□□□□□ -1.74
SMD3	YLR147C	SMK1	P41808	388 aa		4.21	□□□□□ -1.74
SMD3	YLR147C	MEP2	P41948	499 aa		4.21	□□□□□ -1.74
SMD3	YLR147C	PTH2	P34222	208 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	LHS1	P36016	881 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	PCL6	P40038	420 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	MRX1	P40050	688 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	RPN11	P43588	306 aa	Known RBP	4.2	□□□□□ -1.74
SMD3	YLR147C	PFA5	Q03289	374 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	IZH1	Q03419	316 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	ARP9	Q05123	467 aa		4.2	□□□□□ -1.74
SMD3	YLR147C	TKL1	P23254	680 aa	Known RBP	4.19	□□□□□ -1.74
SMD3	YLR147C	SOF1	P33750	489 aa	Known RBP	4.19	□□□□□ -1.74
SMD3	YLR147C	MNN2	P38069	597 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	PSD1	P39006	500 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	IST3	P40565	148 aa	Predicted RBP	4.19	□□□□□ -1.74
SMD3	YLR147C	SAP185	P40856	1058 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	STB2	P46679	850 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	CTK2	P46962	323 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	RSM28	Q03430	361 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	ECM16	Q04217	1267 aa	Known RBP	4.19	□□□□□ -1.74
SMD3	YLR147C	TRM8	Q12009	286 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	VCX1	Q99385	411 aa		4.19	□□□□□ -1.74
SMD3	YLR147C	ERG8	P24521	451 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	RAD16	P31244	790 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	TFC3	P34111	1160 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	MET30	P39014	640 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	ECM10	P39987	644 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	REG1	Q00816	1014 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	ECI1	Q05871	280 aa		4.18	□□□□□ -1.74
SMD3	YLR147C	ERG27	Q12452	347 aa	Known RBP	4.18	□□□□□ -1.74
SMD3	YLR147C	SNF1	P06782	633 aa	Known RBP	4.17	□□□□□ -1.74
SMD3	YLR147C	ESBP6	P53918	673 aa		4.17	□□□□□ -1.74
SMD3	YLR147C	MAK10	Q02197	733 aa		4.17	□□□□□ -1.74
SMD3	YLR147C	ATG16	Q03818	150 aa		4.17	□□□□□ -1.74
SMD3	YLR147C	CBP1	P07252	654 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	SAC1	P32368	623 aa	Known RBP	4.16	□□□□□ -1.74
SMD3	YLR147C	PSY4	P38193	441 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	PFK26	P40433	827 aa	Known RBP	4.16	□□□□□ -1.74
SMD3	YLR147C	HXT9	P40885	567 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	VPS4	P52917	437 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	GTR1	Q00582	310 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	DIG1	Q03063	452 aa	Known RBP	4.16	□□□□□ -1.74
SMD3	YLR147C	VID22	Q05934	901 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	PSR2	Q07949	397 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	PSK2	Q08217	1101 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	GPN2	Q08726	347 aa	Predicted RBP	4.16	□□□□□ -1.74
SMD3	YLR147C	NDD1	Q08887	554 aa		4.16	□□□□□ -1.74
SMD3	YLR147C	CLB2	P24869	491 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	GCS1	P35197	352 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	TEF4	P36008	412 aa	Known RBP	4.15	□□□□□ -1.75
SMD3	YLR147C	VPS24	P36095	224 aa	Known RBP	4.15	□□□□□ -1.75
SMD3	YLR147C	YIL169C	P40442	995 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	YFR020W	P43600	232 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	YTP1	P53584	459 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	FCP1	Q03254	732 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	YOR019W	Q99248	730 aa		4.15	□□□□□ -1.75
SMD3	YLR147C	RAP1	P11938	827 aa		4.14	□□□□□ -1.75
SMD3	YLR147C	MRS6	P32864	603 aa	Known RBP	4.14	□□□□□ -1.75
SMD3	YLR147C	YND1	P40009	630 aa		4.14	□□□□□ -1.75
SMD3	YLR147C	BET4	Q00618	327 aa		4.14	□□□□□ -1.75
SMD3	YLR147C	ARP10	Q04549	284 aa		4.14	□□□□□ -1.75
SMD3	YLR147C	UTP21	Q06078	939 aa	Predicted RBP	4.14	□□□□□ -1.75
SMD3	YLR147C	APL5	Q08951	932 aa	Known RBP	4.14	□□□□□ -1.75
SMD3	YLR147C	SSM4	P40318	1319 aa		4.14	□□□□□ -1.75
SMD3	YLR147C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
SMD3	YLR147C	UME6	P39001	836 aa		4.13	□□□□□ -1.75

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