RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C MDR1P53258 950 aa6.1□□□□□ -1.43
DEF1YKL054C RIA1P53893 1110 aa6.1□□□□□ -1.43
DEF1YKL054C ARP5P53946 755 aa6.1□□□□□ -1.43
DEF1YKL054C MAK10Q02197 733 aa6.1□□□□□ -1.43
DEF1YKL054C VPS54Q12071 889 aa6.1□□□□□ -1.43
DEF1YKL054C COQ4O13525 335 aa6.1□□□□□ -1.43
DEF1YKL054C AFG1P32317 509 aa6.1□□□□□ -1.43
DEF1YKL054C PMT1P33775 817 aa6.1□□□□□ -1.43
DEF1YKL054C MAL33P38157 468 aa6.1□□□□□ -1.43
DEF1YKL054C RFC3P38629 340 aa6.1□□□□□ -1.43
DEF1YKL054C ERC1P38767 581 aa6.1□□□□□ -1.43
DEF1YKL054C REV7P38927 245 aa6.1□□□□□ -1.43
DEF1YKL054C EPL1P43572 832 aa6.1□□□□□ -1.43
DEF1YKL054C ASE1P50275 885 aa6.1□□□□□ -1.43
DEF1YKL054C MAP1Q01662 387 aaKnown RBP RIP-Chip data6.1□□□□□ -1.43not detected
DEF1YKL054C KAP120Q02932 1032 aa6.1□□□□□ -1.43
DEF1YKL054C MUS81Q04149 632 aaPredicted RBP6.1□□□□□ -1.43
DEF1YKL054C NUS1Q12063 375 aa6.1□□□□□ -1.43
DEF1YKL054C NTG1P31378 399 aa6.09□□□□□ -1.43
DEF1YKL054C KES1P35844 434 aaKnown RBP6.09□□□□□ -1.43
DEF1YKL054C EHT1P38295 451 aa6.09□□□□□ -1.43
DEF1YKL054C PFA3P42836 336 aa6.09□□□□□ -1.43
DEF1YKL054C MTR3P48240 250 aaPredicted RBP6.09□□□□□ -1.43
DEF1YKL054C APT1P49435 187 aaKnown RBP6.09□□□□□ -1.43
DEF1YKL054C CUE3P53137 624 aaKnown RBP6.09□□□□□ -1.43
DEF1YKL054C TCO89Q08921 799 aa6.09□□□□□ -1.43
DEF1YKL054C LPD1P09624 499 aaKnown RBP6.09□□□□□ -1.44
DEF1YKL054C ERG6P25087 383 aaKnown RBP6.09□□□□□ -1.44
DEF1YKL054C YME1P32795 747 aa6.09□□□□□ -1.44
DEF1YKL054C DED81P38707 554 aaKnown RBP6.09□□□□□ -1.44
DEF1YKL054C SFB3P38810 929 aa6.09□□□□□ -1.44
DEF1YKL054C SKN7P38889 622 aa6.09□□□□□ -1.44
DEF1YKL054C SAK1P38990 1142 aa6.09□□□□□ -1.44
DEF1YKL054C ZRG8P40021 1076 aa6.09□□□□□ -1.44
DEF1YKL054C DLD2P46681 530 aaKnown RBP6.09□□□□□ -1.44
DEF1YKL054C SMC3P47037 1230 aa6.09□□□□□ -1.44
DEF1YKL054C FMS1P50264 508 aa6.09□□□□□ -1.44
DEF1YKL054C COS12P53053 380 aa6.09□□□□□ -1.44
DEF1YKL054C PPN1Q04119 674 aa6.09□□□□□ -1.44
DEF1YKL054C ATG38Q05789 226 aaKnown RBP6.09□□□□□ -1.44
DEF1YKL054C YSH1Q06224 779 aaPredicted RBP6.09□□□□□ -1.44
DEF1YKL054C SEC39Q12745 709 aa6.09□□□□□ -1.44
DEF1YKL054C VPS33P20795 691 aa6.08□□□□□ -1.44
DEF1YKL054C WBP1P33767 430 aaKnown RBP6.08□□□□□ -1.44
DEF1YKL054C CMC1P36064 111 aa6.08□□□□□ -1.44
DEF1YKL054C PEX32P38292 413 aa6.08□□□□□ -1.44
DEF1YKL054C SER3P40054 469 aa6.08□□□□□ -1.44
DEF1YKL054C LRO1P40345 661 aa6.08□□□□□ -1.44
DEF1YKL054C SDP1P40479 209 aa6.08□□□□□ -1.44
DEF1YKL054C DSE4P53753 1117 aa6.08□□□□□ -1.44
DEF1YKL054C VPS20Q04272 221 aa6.08□□□□□ -1.44
DEF1YKL054C HOM2P13663 365 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C PRP4P20053 465 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C ARC19P33204 171 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C CCL1P37366 393 aa6.07□□□□□ -1.44
DEF1YKL054C NTC20P38302 140 aaPredicted RBP6.07□□□□□ -1.44
DEF1YKL054C YHR078WP38799 552 aa6.07□□□□□ -1.44
DEF1YKL054C YBP2P53169 641 aa6.07□□□□□ -1.44
DEF1YKL054C RHO5P53879 331 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C RCM1P53972 490 aa6.07□□□□□ -1.44
DEF1YKL054C YMR187CQ03236 431 aa6.07□□□□□ -1.44
DEF1YKL054C MSC2Q03455 724 aa6.07□□□□□ -1.44
DEF1YKL054C CLP1Q08685 445 aaPredicted RBP6.07□□□□□ -1.44
DEF1YKL054C TY3A-GQ12173 290 aa6.07□□□□□ -1.44
DEF1YKL054C RUD3Q12234 484 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C TY3A-IQ99219 290 aa6.07□□□□□ -1.44
DEF1YKL054C AI3P03877 415 aa6.07□□□□□ -1.44
DEF1YKL054C TPK2P06245 380 aa6.07□□□□□ -1.44
DEF1YKL054C EST1P17214 699 aaPredicted RBP6.07□□□□□ -1.44
DEF1YKL054C MRE11P32829 692 aa6.07□□□□□ -1.44
DEF1YKL054C YHR112CP38716 378 aa6.07□□□□□ -1.44
DEF1YKL054C BPL1P48445 690 aaPredicted RBP6.07□□□□□ -1.44
DEF1YKL054C YML037CQ03703 340 aa6.07□□□□□ -1.44
DEF1YKL054C VPS38Q05919 439 aa6.07□□□□□ -1.44
DEF1YKL054C DCI1Q08558 271 aa6.07□□□□□ -1.44
DEF1YKL054C PNO1Q99216 274 aaKnown RBP6.07□□□□□ -1.44
DEF1YKL054C URK1P27515 501 aa6.06□□□□□ -1.44
DEF1YKL054C HXT3P32466 567 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C YKT6P36015 200 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C KTR3P38130 404 aaPredicted RBP6.06□□□□□ -1.44
DEF1YKL054C COS111P38308 924 aa6.06□□□□□ -1.44
DEF1YKL054C MLH1P38920 769 aa6.06□□□□□ -1.44
DEF1YKL054C YER034WP40022 185 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C YIL089WP40500 205 aa6.06□□□□□ -1.44
DEF1YKL054C IME4P41833 600 aa6.06□□□□□ -1.44
DEF1YKL054C TWF1P53250 332 aa6.06□□□□□ -1.44
DEF1YKL054C TAP42Q04372 366 aa6.06□□□□□ -1.44
DEF1YKL054C TAL1P15019 335 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C MER1P16523 270 aa6.06□□□□□ -1.44
DEF1YKL054C TUP1P16649 713 aa6.06□□□□□ -1.44
DEF1YKL054C CAD1P24813 409 aaKnown RBP6.06□□□□□ -1.44
DEF1YKL054C DMC1P25453 334 aa6.06□□□□□ -1.44
DEF1YKL054C RML2P32611 393 aa6.06□□□□□ -1.44
DEF1YKL054C MMS4P38257 691 aa6.06□□□□□ -1.44
DEF1YKL054C INA22P40576 216 aa6.06□□□□□ -1.44
DEF1YKL054C ELP2P42935 788 aa6.06□□□□□ -1.44
DEF1YKL054C PET130P47065 347 aa6.06□□□□□ -1.44
DEF1YKL054C YGR012WP53206 393 aa6.06□□□□□ -1.44
DEF1YKL054C YNL143CP53908 130 aa6.06□□□□□ -1.44
DEF1YKL054C EGD1Q02642 157 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms