RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C YLR049CQ12110 428 aa3.92□□□□□ -1.78
RUB1YDR139C YLR302CO13544 120 aa3.91□□□□□ -1.78
RUB1YDR139C YCR006CP25350 157 aa3.91□□□□□ -1.78
RUB1YDR139C CDC15P27636 974 aa3.91□□□□□ -1.78
RUB1YDR139C ASK1P35734 292 aa3.91□□□□□ -1.78
RUB1YDR139C NTR2P36118 322 aaPredicted RBP3.91□□□□□ -1.78
RUB1YDR139C AAP1P37898 856 aaKnown RBP3.91□□□□□ -1.78
RUB1YDR139C UBP13P38187 747 aa3.91□□□□□ -1.78
RUB1YDR139C SEC31P38968 1273 aaKnown RBP3.91□□□□□ -1.78
RUB1YDR139C PFK26P40433 827 aaKnown RBP3.91□□□□□ -1.78
RUB1YDR139C VPS4P52917 437 aa3.91□□□□□ -1.78
RUB1YDR139C SCW4P53334 386 aaKnown RBP3.91□□□□□ -1.78
RUB1YDR139C REG1Q00816 1014 aa3.91□□□□□ -1.78
RUB1YDR139C YML131WQ03102 365 aa3.91□□□□□ -1.78
RUB1YDR139C ECM22Q05958 814 aaPredicted RBP3.91□□□□□ -1.78
RUB1YDR139C YLR455WQ06188 304 aa3.91□□□□□ -1.78
RUB1YDR139C GEP3Q08622 556 aa3.91□□□□□ -1.78
RUB1YDR139C NUS1Q12063 375 aa3.91□□□□□ -1.78
RUB1YDR139C HER1Q12276 1246 aa3.91□□□□□ -1.78
RUB1YDR139C VCX1Q99385 411 aa3.91□□□□□ -1.78
RUB1YDR139C GPA1P08539 472 aa3.9□□□□□ -1.79
RUB1YDR139C AIM17P23180 465 aaKnown RBP3.9□□□□□ -1.79
RUB1YDR139C ERG8P24521 451 aa3.9□□□□□ -1.79
RUB1YDR139C MGM1P32266 881 aa3.9□□□□□ -1.79
RUB1YDR139C YPT11P48559 417 aa3.9□□□□□ -1.79
RUB1YDR139C EAF7P53911 425 aaKnown RBP3.9□□□□□ -1.79
RUB1YDR139C RPL15BP54780 204 aaPredicted RBP3.9□□□□□ -1.79
RUB1YDR139C SWF1Q04629 336 aa3.9□□□□□ -1.79
RUB1YDR139C ATX2Q12067 313 aa3.9□□□□□ -1.79
RUB1YDR139C GUK1P15454 187 aaKnown RBP3.89□□□□□ -1.79
RUB1YDR139C RRN3P36070 627 aa3.89□□□□□ -1.79
RUB1YDR139C VPS41P38959 992 aa3.89□□□□□ -1.79
RUB1YDR139C YER010CP40011 234 aa3.89□□□□□ -1.79
RUB1YDR139C SWP82P43554 623 aa3.89□□□□□ -1.79
RUB1YDR139C MPS1P54199 764 aa3.89□□□□□ -1.79
RUB1YDR139C RSM28Q03430 361 aa3.89□□□□□ -1.79
RUB1YDR139C RCO1Q04779 684 aa3.89□□□□□ -1.79
RUB1YDR139C NEW1Q08972 1196 aaKnown RBP3.89□□□□□ -1.79
RUB1YDR139C YER145C-AA0A023PYF4 145 aa3.88□□□□□ -1.79
RUB1YDR139C PET111P08468 800 aa3.88□□□□□ -1.79
RUB1YDR139C AXL2P38928 823 aa3.88□□□□□ -1.79
RUB1YDR139C PSD1P39006 500 aa3.88□□□□□ -1.79
RUB1YDR139C ECM10P39987 644 aa3.88□□□□□ -1.79
RUB1YDR139C RPN11P43588 306 aaKnown RBP3.88□□□□□ -1.79
RUB1YDR139C CTK2P46962 323 aa3.88□□□□□ -1.79
RUB1YDR139C MDV1P47025 714 aa3.88□□□□□ -1.79
RUB1YDR139C VPS25P47142 202 aa3.88□□□□□ -1.79
RUB1YDR139C PFA5Q03289 374 aa3.88□□□□□ -1.79
RUB1YDR139C PSK2Q08217 1101 aa3.88□□□□□ -1.79
RUB1YDR139C NBP2Q12163 236 aa3.88□□□□□ -1.79
RUB1YDR139C YCP4P25349 247 aaKnown RBP3.87□□□□□ -1.79
RUB1YDR139C PXL1P36166 706 aa3.87□□□□□ -1.79
RUB1YDR139C YIR016WP40572 265 aa3.87□□□□□ -1.79
RUB1YDR139C YGL036WP53185 909 aaPredicted RBP3.87□□□□□ -1.79
RUB1YDR139C YPL068CQ02749 293 aa3.87□□□□□ -1.79
RUB1YDR139C SSP2Q08646 371 aa3.87□□□□□ -1.79
RUB1YDR139C YOR019WQ99248 730 aa3.87□□□□□ -1.79
RUB1YDR139C RPB2P08518 1224 aaKnown RBP3.86□□□□□ -1.79
RUB1YDR139C STE50P25344 346 aa3.86□□□□□ -1.79
RUB1YDR139C RER1P25560 188 aa3.86□□□□□ -1.79
RUB1YDR139C MRP20P32387 263 aa3.86□□□□□ -1.79
RUB1YDR139C IME4P41833 600 aa3.86□□□□□ -1.79
RUB1YDR139C IST1P53843 298 aaPredicted RBP3.86□□□□□ -1.79
RUB1YDR139C MUB1Q03162 620 aa3.86□□□□□ -1.79
RUB1YDR139C CAC2Q04199 468 aa3.86□□□□□ -1.79
RUB1YDR139C SNO4Q04902 237 aa3.86□□□□□ -1.79
RUB1YDR139C POS5Q06892 414 aa3.86□□□□□ -1.79
RUB1YDR139C GPN2Q08726 347 aaPredicted RBP3.86□□□□□ -1.79
RUB1YDR139C FRE3Q08905 711 aa3.86□□□□□ -1.79
RUB1YDR139C HSP33Q08914 237 aaKnown RBP3.86□□□□□ -1.79
RUB1YDR139C HSP32Q08992 237 aa3.86□□□□□ -1.79
RUB1YDR139C PUF2Q12221 1075 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
RUB1YDR139C UBX3Q12229 455 aa3.86□□□□□ -1.79
RUB1YDR139C YBR085C-AO43137 85 aa3.85□□□□□ -1.79
RUB1YDR139C YPT1P01123 206 aaKnown RBP3.85□□□□□ -1.79
RUB1YDR139C HXK2P04807 486 aaKnown RBP3.85□□□□□ -1.79
RUB1YDR139C CHO1P08456 276 aa3.85□□□□□ -1.79
RUB1YDR139C RAP1P11938 827 aa3.85□□□□□ -1.79
RUB1YDR139C TKL1P23254 680 aaKnown RBP3.85□□□□□ -1.79
RUB1YDR139C SSH4P32343 579 aa3.85□□□□□ -1.79
RUB1YDR139C SAC1P32368 623 aaKnown RBP3.85□□□□□ -1.79
RUB1YDR139C CBF2P32504 956 aa3.85□□□□□ -1.79
RUB1YDR139C ESL2P36168 1195 aa3.85□□□□□ -1.79
RUB1YDR139C GND1P38720 489 aaKnown RBP3.85□□□□□ -1.79
RUB1YDR139C YNR061CP53747 219 aa3.85□□□□□ -1.79
RUB1YDR139C CBK1P53894 756 aa3.85□□□□□ -1.79
RUB1YDR139C YMR018WQ04364 514 aa3.85□□□□□ -1.79
RUB1YDR139C GSH2Q08220 491 aa3.85□□□□□ -1.79
RUB1YDR139C YOL087CQ99247 1116 aa3.85□□□□□ -1.79
RUB1YDR139C KTR3P38130 404 aaPredicted RBP3.84□□□□□ -1.79
RUB1YDR139C SLZ1P40167 298 aa3.84□□□□□ -1.79
RUB1YDR139C SEC24P40482 926 aaKnown RBP3.84□□□□□ -1.79
RUB1YDR139C PKP1P40530 394 aa3.84□□□□□ -1.79
RUB1YDR139C IRC8P47046 822 aa3.84□□□□□ -1.79
RUB1YDR139C LYS20P48570 428 aaKnown RBP3.84□□□□□ -1.79
RUB1YDR139C BOP3P53958 396 aa3.84□□□□□ -1.79
RUB1YDR139C ASI1P54074 624 aa3.84□□□□□ -1.79
RUB1YDR139C OPY2Q06810 360 aa3.84□□□□□ -1.79
RUB1YDR139C ATO2P32907 282 aa3.83□□□□□ -1.8
RUB1YDR139C ALY1P36117 915 aa3.83□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms