RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SNHG28P0DPA3 235 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 XBP1P17861 261 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 SMARCA1P28370 1054 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 TNNI2P48788 182 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 UBE2HP62256 183 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 PKN1Q16512 942 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 CERKLQ49MI3 558 aaPredicted RBP10.86□□□□□ -0.67
VPS52-216ENST00000471309 TMEM179Q6ZVK1 233 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 MICALL2Q8IY33 904 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 CCDC82Q8N4S0 544 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 GPT2Q8TD30 523 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 SYT17Q9BSW7 474 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 SPZ1Q9BXG8 430 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 VEZTQ9HBM0 779 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 GJB4Q9NTQ9 266 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 SHTN1A0MZ66 631 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 FAM196BA6NMK8 535 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 KIF28PB7ZC32 967 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 MPHOSPH10O00566 681 aaKnown RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 TBC1D12O60347 775 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 PARP1P09874 1014 aaKnown RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 PDHBP11177 359 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 SCG2P13521 617 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 YY1P25490 414 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 U2AF2P26368 475 aaKnown RBP eCLIP10.85□□□□□ -0.672e-10■■□□□ 11.8
VPS52-216ENST00000471309 TNFAIP1Q13829 316 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 SAFBQ15424 915 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS52-216ENST00000471309 PFKFB3Q16875 520 aaPredicted RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 NBPF9Q3BBW0 867 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 ASPRV1Q53RT3 343 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 ARHGAP27Q6ZUM4 889 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 FAM177A1Q8N128 213 aaPredicted RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 GPC2Q8N158 579 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 LEO1Q8WVC0 666 aaPredicted RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 SPATA32Q96LK8 384 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 KANSL2Q9H9L4 492 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 SYNPO2Q9UMS6 1093 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 GJA3Q9Y6H8 435 aa10.85□□□□□ -0.67
VPS52-216ENST00000471309 V9GY48 417 aaPredicted RBP10.85□□□□□ -0.67
VPS52-216ENST00000471309 GADD45BO75293 160 aaPredicted RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 MYCNP04198 464 aaPredicted RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 GNL2Q13823 731 aaKnown RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 GSE1Q14687 1217 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 ABCB5Q2M3G0 1257 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 KIF4BQ2VIQ3 1234 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 MYSM1Q5VVJ2 828 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 CLEC10AQ8IUN9 316 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 DIS3L2Q8IYB7 885 aaKnown RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 LRRC47Q8N1G4 583 aaKnown RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 STAG2Q8N3U4 1231 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 MKL1Q969V6 931 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 PHF20Q9BVI0 1012 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 FOXP1Q9H334 677 aaPredicted RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS52-216ENST00000471309 SH3GLB2Q9NR46 395 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 NYAP2Q9P242 653 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 PGAP2Q9UHJ9 254 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 CNOT7Q9UIV1 285 aaKnown RBP10.84□□□□□ -0.67
VPS52-216ENST00000471309 ATAD5Q96QE3 1844 aa10.84□□□□□ -0.67
VPS52-216ENST00000471309 KLRF2D3W0D1 207 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 EGFRP00533 1210 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 SLURP2P0DP57 97 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 NASPP49321 788 aaPredicted RBP10.83□□□□□ -0.68
VPS52-216ENST00000471309 MAP3K10Q02779 954 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 ICA1Q05084 483 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 RBM26Q5T8P6 1007 aaKnown RBP10.83□□□□□ -0.68
VPS52-216ENST00000471309 NOSTRINQ8IVI9 506 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 SHISA4Q96DD7 197 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 USP28Q96RU2 1077 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 TMEM39BQ9GZU3 492 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 POLR3EQ9NVU0 708 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 RTEL1Q9NZ71 1219 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 VPS54Q9P1Q0 977 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 TFIP11Q9UBB9 837 aaKnown RBP10.83□□□□□ -0.68
VPS52-216ENST00000471309 CLIP2Q9UDT6 1046 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 RCOR1Q9UKL0 485 aa10.83□□□□□ -0.68
VPS52-216ENST00000471309 USP17L5A8MUK1 530 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 H7C1D1 291 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 hCG_1984214I3L0E3 225 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 CYTH3O43739 400 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 GDF11O95390 407 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 YEATS4O95619 227 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 EEF2P13639 858 aaKnown RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 YBX3P16989 372 aaKnown RBP eCLIP10.82□□□□□ -0.68
VPS52-216ENST00000471309 KRT2P35908 639 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 ZNF543Q08ER8 600 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 SEPT2Q15019 361 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 SLC35G1Q2M3R5 365 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 TBC1D10BQ4KMP7 808 aaPredicted RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 GPATCH4Q5T3I0 446 aaKnown RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 CAVIN1Q6NZI2 390 aaKnown RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 USP17L2Q6R6M4 530 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 RASGRP2Q7LDG7 609 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 ZNF713Q8N859 430 aaPredicted RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 GMCL1P1Q8NEA9 526 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 DCAF4Q8WV16 495 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 SYAP1Q96A49 352 aaPredicted RBP10.82□□□□□ -0.68
VPS52-216ENST00000471309 TEPSINQ96N21 525 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 BRMS1Q9HCU9 246 aa10.82□□□□□ -0.68
VPS52-216ENST00000471309 CABP5Q9NP86 173 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms