RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C LSB1P53281 241 aa6.15□□□□□ -1.42
DEF1YKL054C NSG2P53898 299 aa6.15□□□□□ -1.42
DEF1YKL054C HMO1Q03973 246 aaKnown RBP6.15□□□□□ -1.42
DEF1YKL054C KAP95Q06142 861 aaKnown RBP6.15□□□□□ -1.42
DEF1YKL054C THI22Q06490 572 aa6.15□□□□□ -1.42
DEF1YKL054C PUS7Q08647 676 aaKnown RBP6.15□□□□□ -1.42
DEF1YKL054C UAF30Q08747 228 aa6.15□□□□□ -1.42
DEF1YKL054C YOR223WQ12015 292 aa6.15□□□□□ -1.42
DEF1YKL054C YLR358CO13565 187 aa6.15□□□□□ -1.43
DEF1YKL054C DFR1P07807 211 aaKnown RBP RIP-Chip data6.15□□□□□ -1.43not detected
DEF1YKL054C PHO91P27514 894 aa6.15□□□□□ -1.43
DEF1YKL054C RPT5P33297 434 aaKnown RBP6.15□□□□□ -1.43
DEF1YKL054C MCX1P38323 520 aaPredicted RBP6.15□□□□□ -1.43
DEF1YKL054C SMC2P38989 1170 aaKnown RBP6.15□□□□□ -1.43
DEF1YKL054C YIL108WP40483 696 aaKnown RBP6.15□□□□□ -1.43
DEF1YKL054C PET122P10355 254 aa6.14□□□□□ -1.43
DEF1YKL054C SAM35P14693 329 aa6.14□□□□□ -1.43
DEF1YKL054C AUR1P36107 401 aaPredicted RBP6.14□□□□□ -1.43
DEF1YKL054C SPT8P38915 602 aa6.14□□□□□ -1.43
DEF1YKL054C ARB1P40024 610 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C CAK1P43568 368 aaPredicted RBP6.14□□□□□ -1.43
DEF1YKL054C MLC1P53141 149 aa6.14□□□□□ -1.43
DEF1YKL054C LCL3P53153 274 aa6.14□□□□□ -1.43
DEF1YKL054C SQS1P53866 767 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C RQC1Q05468 723 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C MSC3Q05812 728 aa6.14□□□□□ -1.43
DEF1YKL054C MCP2Q06567 569 aa6.14□□□□□ -1.43
DEF1YKL054C RRT8Q08219 342 aa6.14□□□□□ -1.43
DEF1YKL054C ATP2P00830 511 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C SYN8P31377 255 aa6.14□□□□□ -1.43
DEF1YKL054C SRB2P34162 210 aa6.14□□□□□ -1.43
DEF1YKL054C WHI3P34761 661 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C VFA1P40080 203 aa6.14□□□□□ -1.43
DEF1YKL054C PXA1P41909 870 aa6.14□□□□□ -1.43
DEF1YKL054C DAK1P54838 584 aaKnown RBP6.14□□□□□ -1.43
DEF1YKL054C ECM18Q04623 453 aa6.14□□□□□ -1.43
DEF1YKL054C GAS5Q08193 484 aa6.14□□□□□ -1.43
DEF1YKL054C SWT1Q12104 458 aa6.14□□□□□ -1.43
DEF1YKL054C CTF3Q12748 733 aa6.14□□□□□ -1.43
DEF1YKL054C PYC1P11154 1178 aaKnown RBP6.13□□□□□ -1.43
DEF1YKL054C CRM1P30822 1084 aaKnown RBP6.13□□□□□ -1.43
DEF1YKL054C PUS2P53167 370 aa6.13□□□□□ -1.43
DEF1YKL054C BUD9P53226 547 aa6.13□□□□□ -1.43
DEF1YKL054C VPS64Q03944 604 aa6.13□□□□□ -1.43
DEF1YKL054C BUD7Q08754 746 aa6.13□□□□□ -1.43
DEF1YKL054C RPS7AP26786 190 aaKnown RBP6.13□□□□□ -1.43
DEF1YKL054C LTV1P34078 463 aa6.13□□□□□ -1.43
DEF1YKL054C REG2P38232 338 aa6.13□□□□□ -1.43
DEF1YKL054C RRM3P38766 723 aa6.13□□□□□ -1.43
DEF1YKL054C CHS6P40955 746 aa6.13□□□□□ -1.43
DEF1YKL054C MET12P46151 657 aa6.13□□□□□ -1.43
DEF1YKL054C BIT61P47041 543 aa6.13□□□□□ -1.43
DEF1YKL054C ABZ2Q03266 374 aa6.13□□□□□ -1.43
DEF1YKL054C TPP1Q03796 238 aa6.13□□□□□ -1.43
DEF1YKL054C STP3Q05937 343 aa6.13□□□□□ -1.43
DEF1YKL054C CDA1Q06702 301 aa6.13□□□□□ -1.43
DEF1YKL054C YOR019WQ99248 730 aa6.13□□□□□ -1.43
DEF1YKL054C BUD14P27637 709 aa6.12□□□□□ -1.43
DEF1YKL054C RRT2P38332 387 aa6.12□□□□□ -1.43
DEF1YKL054C OTU2P38747 307 aaKnown RBP6.12□□□□□ -1.43
DEF1YKL054C CTF8P38877 133 aa6.12□□□□□ -1.43
DEF1YKL054C CRG1P38892 291 aaRIP-Chip data6.12□□□□□ -1.43not detected
DEF1YKL054C YNL195CP40168 261 aa6.12□□□□□ -1.43
DEF1YKL054C DOT5P40553 215 aa6.12□□□□□ -1.43
DEF1YKL054C ZAP1P47043 880 aa6.12□□□□□ -1.43
DEF1YKL054C RBS1Q05672 457 aaKnown RBP6.12□□□□□ -1.43
DEF1YKL054C PEX19Q07418 342 aa6.12□□□□□ -1.43
DEF1YKL054C SVS1Q12254 260 aa6.12□□□□□ -1.43
DEF1YKL054C RIB2Q12362 591 aaKnown RBP6.12□□□□□ -1.43
DEF1YKL054C SAC7P17121 654 aa6.11□□□□□ -1.43
DEF1YKL054C PRE8P23639 250 aa6.11□□□□□ -1.43
DEF1YKL054C MAE1P36013 669 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C GPT2P36148 743 aa6.11□□□□□ -1.43
DEF1YKL054C STB5P38699 743 aa6.11□□□□□ -1.43
DEF1YKL054C PKP1P40530 394 aa6.11□□□□□ -1.43
DEF1YKL054C EFM3P47163 339 aa6.11□□□□□ -1.43
DEF1YKL054C KEL2P50090 882 aa6.11□□□□□ -1.43
DEF1YKL054C YGR111WP53265 400 aa6.11□□□□□ -1.43
DEF1YKL054C ATG29Q12092 213 aa6.11□□□□□ -1.43
DEF1YKL054C UBX3Q12229 455 aa6.11□□□□□ -1.43
DEF1YKL054C YDR215CQ12240 137 aa6.11□□□□□ -1.43
DEF1YKL054C GRR1P24814 1151 aa6.11□□□□□ -1.43
DEF1YKL054C PAP1P29468 568 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C PRE2P30656 287 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C PGM1P33401 570 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C SEF1P34228 1148 aa6.11□□□□□ -1.43
DEF1YKL054C YBL028CP38202 106 aa6.11□□□□□ -1.43
DEF1YKL054C ICP55P40051 511 aa6.11□□□□□ -1.43
DEF1YKL054C FTR1P40088 404 aa6.11□□□□□ -1.43
DEF1YKL054C ALK1P43633 760 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C YGR066CP53242 292 aa6.11□□□□□ -1.43
DEF1YKL054C ARG5,6Q01217 863 aa6.11□□□□□ -1.43
DEF1YKL054C SMD2Q06217 110 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C TY1A-NL1Q12391 440 aaKnown RBP6.11□□□□□ -1.43
DEF1YKL054C BUD5P25300 642 aaPredicted RBP6.1□□□□□ -1.43
DEF1YKL054C SEC66P33754 206 aa6.1□□□□□ -1.43
DEF1YKL054C YUH1P35127 236 aa6.1□□□□□ -1.43
DEF1YKL054C KSP1P38691 1029 aaKnown RBP6.1□□□□□ -1.43
DEF1YKL054C PRY1P47032 299 aa6.1□□□□□ -1.43
DEF1YKL054C YGL036WP53185 909 aaPredicted RBP6.1□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 32.2 ms