RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	TY2A-C	P25383	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	YCR061W	P25639	631 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	MFT1	P33441	392 aa	Known RBP	5.24	□□□□□ -1.57
CAF16	YFL028C	IST3	P40565	148 aa	Predicted RBP	5.24	□□□□□ -1.57
CAF16	YFL028C	YIP4	P53093	235 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	SNF12	P53628	566 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	ATG4	P53867	494 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	REG1	Q00816	1014 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-DR2	Q03483	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	YMR206W	Q03695	313 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	VAM6	Q07468	1049 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-B	Q12260	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-OR2	Q12293	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-DR1	Q12392	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-OR1	Q12439	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-DR3	Q99303	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	HSP104	P31539	908 aa	Known RBP	5.23	□□□□□ -1.57
CAF16	YFL028C	SDH8	P38345	138 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	LNP1	P38878	278 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	THI6	P41835	540 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	BUD17	P53727	317 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	BSC5	P53755	489 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	DAK1	P54838	584 aa	Known RBP	5.23	□□□□□ -1.57
CAF16	YFL028C	SKM1	Q12469	655 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	LAM4	P38800	1345 aa		5.23	□□□□□ -1.57
CAF16	YFL028C	OSM1	P21375	501 aa	Known RBP	5.22	□□□□□ -1.57
CAF16	YFL028C	YJR061W	P40355	935 aa		5.22	□□□□□ -1.57
CAF16	YFL028C	LYS4	P49367	693 aa	Predicted RBP	5.22	□□□□□ -1.57
CAF16	YFL028C	CSL4	P53859	292 aa	Predicted RBP	5.22	□□□□□ -1.57
CAF16	YFL028C	USA1	Q03714	838 aa		5.22	□□□□□ -1.57
CAF16	YFL028C	SDH5	Q08230	162 aa		5.22	□□□□□ -1.57
CAF16	YFL028C	TMA16	Q08687	178 aa		5.22	□□□□□ -1.57
CAF16	YFL028C	YER175W-A	Q8TGU4	54 aa		5.22	□□□□□ -1.57
CAF16	YFL028C	GLT1	Q12680	2145 aa	Known RBP	5.21	□□□□□ -1.57
CAF16	YFL028C	SEM1	O94742	89 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	CDC31	P06704	161 aa	Known RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	URK1	P27515	501 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	PMI40	P29952	429 aa	Known RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	CCL1	P37366	393 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	ARO9	P38840	513 aa	Predicted RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	PSD1	P39006	500 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	RTR1	P40084	226 aa	Predicted RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	ARG2	P40360	574 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	NDC80	P40460	691 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	SRB7	P47822	140 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	CTF4	Q01454	927 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	RPS15	Q01855	142 aa	Known RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	KIN4	Q01919	800 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	MTG1	Q03151	367 aa	Predicted RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	GIR2	Q03768	265 aa	Predicted RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	GSF2	Q04697	403 aa	Known RBP	5.21	□□□□□ -1.58
CAF16	YFL028C	NBP2	Q12163	236 aa		5.21	□□□□□ -1.58
CAF16	YFL028C	YPK1	P12688	680 aa	Known RBP	5.2	□□□□□ -1.58
CAF16	YFL028C	STE4	P18851	423 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	MRP20	P32387	263 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	CDC5	P32562	705 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	YIL161W	P40449	235 aa	Known RBP	5.2	□□□□□ -1.58
CAF16	YFL028C	PMT6	P42934	759 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	CTR1	P49573	406 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	ASE1	P50275	885 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	RBG2	P53295	368 aa	Known RBP	5.2	□□□□□ -1.58
CAF16	YFL028C	SPC98	P53540	846 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	SMX3	P54999	86 aa	Predicted RBP	5.2	□□□□□ -1.58
CAF16	YFL028C	YOR111W	Q99210	232 aa		5.2	□□□□□ -1.58
CAF16	YFL028C	MRP7	P12687	371 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	MET8	P15807	274 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	ERG8	P24521	451 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	PRD1	P25375	712 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	CNE1	P27825	502 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	LOT5	P34234	306 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	UBS1	P38290	277 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	YHL017W	P38745	532 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	UBP5	P39944	805 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	MPP10	P47083	593 aa	Known RBP	5.19	□□□□□ -1.58
CAF16	YFL028C	MUK1	Q02866	612 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	VIP1	Q06685	1146 aa	Known RBP	5.19	□□□□□ -1.58
CAF16	YFL028C	BMS1	Q08965	1183 aa	Known RBP	5.19	□□□□□ -1.58
CAF16	YFL028C	TGS1	Q12052	315 aa		5.19	□□□□□ -1.58
CAF16	YFL028C	RVB2	Q12464	471 aa	Known RBP	5.19	□□□□□ -1.58
CAF16	YFL028C	TUB2	P02557	457 aa	Known RBP	5.18	□□□□□ -1.58
CAF16	YFL028C	PDE1	P22434	369 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	TRM2	P33753	639 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	GMH1	P36125	273 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	KTR3	P38130	404 aa	Predicted RBP	5.18	□□□□□ -1.58
CAF16	YFL028C	FMP10	P40098	244 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	PFK26	P40433	827 aa	Known RBP	5.18	□□□□□ -1.58
CAF16	YFL028C	SIP4	P46954	829 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	TIM10	P87108	93 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	NGL2	Q03264	515 aa	Known RBP	5.18	□□□□□ -1.58
CAF16	YFL028C	YDR179W-A	Q03983	463 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	YDL144C	Q07589	356 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	ENT4	Q07872	247 aa		5.18	□□□□□ -1.58
CAF16	YFL028C	ERG27	Q12452	347 aa	Known RBP	5.18	□□□□□ -1.58
CAF16	YFL028C	FOB1	O13329	566 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	RPB2	P08518	1224 aa	Known RBP	5.17	□□□□□ -1.58
CAF16	YFL028C	CDC24	P11433	854 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF16	YFL028C	SPO16	P17122	198 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	CMK1	P27466	446 aa	Known RBP	5.17	□□□□□ -1.58
CAF16	YFL028C	GLG1	P36143	616 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	PIH1	P38768	344 aa		5.17	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms