RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	MBR1	P23493	339 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	PEP3	P27801	918 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	MGM1	P32266	881 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	DSS4	P32601	143 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	NUP120	P35729	1037 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	RKM3	P38222	552 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	YHL017W	P38745	532 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	VPS8	P39702	1274 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	YEL068C	P39977	110 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	YMR147W	P40218	223 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	ESL1	P40456	1118 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	DPH1	P40487	425 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	YJL163C	P46996	555 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	LYS4	P49367	693 aa	Predicted RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	RSC1	P53236	928 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	ARP5	P53946	755 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	CLU1	Q03690	1277 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	SYF1	Q04048	859 aa	Predicted RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	GSF2	Q04697	403 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	THI3	Q07471	609 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	ICL2	Q12031	575 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	YPL150W	Q12152	901 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	NBP2	Q12163	236 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	TAH18	Q12181	623 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	COX17	Q12287	69 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	PMD1	P32634	1753 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	SEM1	O94742	89 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	CPA2	P03965	1118 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	MATALPHA2	P0CY08	210 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	HMLALPHA2	P0CY09	210 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	AAC3	P18238	307 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	EFT1	P32324	842 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
UBX5	YDR330W	CTP1	P38152	299 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
UBX5	YDR330W	FMP52	P40008	231 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	SKP2	P42843	763 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	PSP1	P50896	841 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	COS12	P53053	380 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	YAP1802	P53309	568 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	SPC19	Q03954	165 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	SNO4	Q04902	237 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	HOF1	Q05080	669 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	RGC1	Q06108	1083 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	SDH5	Q08230	162 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	FRE5	Q08908	694 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	HSP33	Q08914	237 aa	Known RBP	4.16	□□□□□ -1.74
UBX5	YDR330W	HSP32	Q08992	237 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	SIR3	P06701	978 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	FRS2	P15625	503 aa	Known RBP	4.15	□□□□□ -1.75
UBX5	YDR330W	ERG4	P25340	473 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	CAP1	P28495	268 aa	Known RBP	4.15	□□□□□ -1.75
UBX5	YDR330W	PHO11	P35842	467 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	MAL33	P38157	468 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	PHO12	P38693	467 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	KHA1	P40309	873 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	IST3	P40565	148 aa	Predicted RBP	4.15	□□□□□ -1.75
UBX5	YDR330W	ZAP1	P47043	880 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	IRC8	P47046	822 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	BUL1	P48524	976 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	COG1	P53079	417 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	BSC5	P53755	489 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	YSH1	Q06224	779 aa	Predicted RBP	4.15	□□□□□ -1.75
UBX5	YDR330W	SPN1	Q06505	410 aa	Predicted RBP	4.15	□□□□□ -1.75
UBX5	YDR330W	IZH3	Q07959	543 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	AIM39	Q08223	395 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	FIG2	P25653	1609 aa		4.15	□□□□□ -1.75
UBX5	YDR330W	YLR302C	O13544	120 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	CYB2	P00175	591 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	RDS1	P25611	832 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	FUB1	P25659	250 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	PRE2	P30656	287 aa	Known RBP	4.14	□□□□□ -1.75
UBX5	YDR330W	MSS1	P32559	526 aa	Predicted RBP	4.14	□□□□□ -1.75
UBX5	YDR330W	SPL2	P38839	148 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
UBX5	YDR330W	UPF3	P48412	387 aa	Known RBP	4.14	□□□□□ -1.75
UBX5	YDR330W	FHN1	P53279	174 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	RNT1	Q02555	471 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	INM2	Q05533	292 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	RIX7	Q07844	837 aa	Known RBP	4.14	□□□□□ -1.75
UBX5	YDR330W	ETT1	Q08421	412 aa	Known RBP	4.14	□□□□□ -1.75
UBX5	YDR330W	SKM1	Q12469	655 aa		4.14	□□□□□ -1.75
UBX5	YDR330W	PMA1	P05030	918 aa	Known RBP	4.13	□□□□□ -1.75
UBX5	YDR330W	COQ1	P18900	473 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	ARB1	P40024	610 aa	Known RBP	4.13	□□□□□ -1.75
UBX5	YDR330W	YJR061W	P40355	935 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	EFR3	Q03653	782 aa	Known RBP	4.13	□□□□□ -1.75
UBX5	YDR330W	VAM6	Q07468	1049 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	YDL086W	Q07505	273 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	SUL2	Q12325	893 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	DDP1	Q99321	188 aa	Known RBP	4.13	□□□□□ -1.75
UBX5	YDR330W	HKR1	P41809	1802 aa		4.13	□□□□□ -1.75
UBX5	YDR330W	FOB1	O13329	566 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	ATP2	P00830	511 aa	Known RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	ALG7	P07286	448 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-LR1	P0C2J4	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-F	P0CX61	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-GR2	P0CX62	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	THR1	P17423	357 aa	Known RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	LCB1	P25045	558 aa	Known RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms