RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	PLM2	Q04383	521 aa		4.03	□□□□□ -1.76
CUP9	YPL177C	STP3	Q05937	343 aa		4.03	□□□□□ -1.76
CUP9	YPL177C	BLS1	Q06071	122 aa		4.03	□□□□□ -1.76
CUP9	YPL177C	PRS5	Q12265	496 aa	Known RBP	4.03	□□□□□ -1.76
CUP9	YPL177C	NUC1	P08466	329 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	KGD2	P19262	463 aa	Predicted RBP	4.02	□□□□□ -1.77
CUP9	YPL177C	PDE1	P22434	369 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	YCL049C	P25577	312 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	PWP2	P25635	923 aa	Known RBP	4.02	□□□□□ -1.77
CUP9	YPL177C	URK1	P27515	501 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	PTH2	P34222	208 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	FSH1	P38777	243 aa	Known RBP	4.02	□□□□□ -1.77
CUP9	YPL177C	PSF2	P40359	213 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	ERG13	P54839	491 aa	Known RBP	4.02	□□□□□ -1.77
CUP9	YPL177C	RSC9	Q03124	581 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	TRS130	Q03660	1102 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	YBR255C-A	Q3E776	120 aa		4.02	□□□□□ -1.77
CUP9	YPL177C	COX1	P00401	534 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	BIK1	P11709	440 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	GSY2	P27472	705 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	SIP1	P32578	815 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	MRS6	P32864	603 aa	Known RBP	4.01	□□□□□ -1.77
CUP9	YPL177C	ERC1	P38767	581 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	BST1	P43571	1029 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	ZAP1	P47043	880 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	NPA3	P47122	385 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	YGR079W	P53249	370 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	VMS1	Q04311	632 aa	Known RBP	4.01	□□□□□ -1.77
CUP9	YPL177C	RDL1	Q12305	139 aa	Known RBP	4.01	□□□□□ -1.77
CUP9	YPL177C	PCD1	Q12524	340 aa		4.01	□□□□□ -1.77
CUP9	YPL177C	GCD7	P32502	381 aa	Predicted RBP	4	□□□□□ -1.77
CUP9	YPL177C	RPF2	P36160	344 aa	Known RBP	4	□□□□□ -1.77
CUP9	YPL177C	IFA38	P38286	347 aa		4	□□□□□ -1.77
CUP9	YPL177C	FAF1	P40546	346 aa	Predicted RBP	4	□□□□□ -1.77
CUP9	YPL177C	SAP185	P40856	1058 aa		4	□□□□□ -1.77
CUP9	YPL177C	SKP2	P42843	763 aa		4	□□□□□ -1.77
CUP9	YPL177C	YGR021W	P53212	290 aa		4	□□□□□ -1.77
CUP9	YPL177C	SCW4	P53334	386 aa	Known RBP	4	□□□□□ -1.77
CUP9	YPL177C	AAT1	Q01802	451 aa		4	□□□□□ -1.77
CUP9	YPL177C	MRPL13	Q02204	264 aa		4	□□□□□ -1.77
CUP9	YPL177C	RVB2	Q12464	471 aa	Known RBP	4	□□□□□ -1.77
CUP9	YPL177C	SES1	P07284	462 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	TRX2	P22803	104 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	SWC3	P31376	625 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	ASK1	P35734	292 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	KES1	P35844	434 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	EXO84	P38261	753 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	VBA2	P38358	474 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	IMD2	P38697	523 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	BUD16	P39988	312 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	PCI8	P40512	444 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	CIR1	P42940	261 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	SNO3	P43544	222 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	IMD3	P50095	523 aa	Known RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	MTG1	Q03151	367 aa	Predicted RBP	3.99	□□□□□ -1.77
CUP9	YPL177C	BSP1	Q06604	576 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	COX17	Q12287	69 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	YLR111W	Q12528	110 aa		3.99	□□□□□ -1.77
CUP9	YPL177C	BI2	P03873	423 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	MTF2	P10849	440 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	PXL1	P36166	706 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	APD1	P38281	316 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	FUN12	P39730	1002 aa	Known RBP	3.98	□□□□□ -1.77
CUP9	YPL177C	RAD26	P40352	1085 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	MNT3	P40549	630 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	SMK1	P41808	388 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	GTR1	Q00582	310 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	YPL071C	Q02864	156 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	SPN1	Q06505	410 aa	Predicted RBP	3.98	□□□□□ -1.77
CUP9	YPL177C	RAD34	Q06665	692 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	YOR389W	Q08912	624 aa		3.98	□□□□□ -1.77
CUP9	YPL177C	UBC1	P21734	215 aa	Known RBP	3.97	□□□□□ -1.77
CUP9	YPL177C	RFA2	P26754	273 aa	Known RBP	3.97	□□□□□ -1.77
CUP9	YPL177C	LAC1	P28496	418 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	MRPL36	P36531	177 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	SPC97	P38863	823 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	UBX6	P47049	396 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	RRT6	P53117	311 aa	Predicted RBP	3.97	□□□□□ -1.77
CUP9	YPL177C	YAT1	P80235	687 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	YDR109C	Q04585	715 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	TFC6	Q06339	672 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	VAM6	Q07468	1049 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	PSR2	Q07949	397 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	YPL191C	Q08930	360 aa		3.97	□□□□□ -1.77
CUP9	YPL177C	ATP2	P00830	511 aa	Known RBP	3.96	□□□□□ -1.78
CUP9	YPL177C	ILV2	P07342	687 aa	Known RBP	3.96	□□□□□ -1.78
CUP9	YPL177C	MAK32	P23060	363 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	GSH1	P32477	678 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	HES1	P35843	434 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	FTH1	P38310	465 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	NPR3	P38742	1146 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	UBP7	P40453	1071 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	BNA1	P47096	177 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	GTB1	Q04924	702 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	TPO3	Q06451	622 aa		3.96	□□□□□ -1.78
CUP9	YPL177C	TPK1	P06244	397 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	YML003W	P0CF16	290 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	URE2	P23202	354 aa	Known RBP	3.95	□□□□□ -1.78
CUP9	YPL177C	PTC6	P25646	442 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	PSY4	P38193	441 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms