RNA–Protein interactions for RNA: YNL224C

SQS1, Transcript of Protein that stimulates the ATPase and helicase activities of Prp43p, yeast

Gene SQS1, Length 2,304 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SQS1	YNL224C	VPS1	P21576	704 aa	Known RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
SQS1	YNL224C	PAT1	P25644	796 aa	Known RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	ITR2	P30606	609 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	CPR5	P35176	225 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	FMO1	P38866	432 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	YDR089W	P38966	869 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	RTR1	P40084	226 aa	Predicted RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	SCC4	P40090	624 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	GID8	P40208	455 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	ALG5	P40350	334 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	ASG1	P40467	964 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	REF2	P42073	533 aa	Predicted RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	BNA3	P47039	444 aa	Known RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	ENT3	P47160	408 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	RPA14	P50106	137 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	ADE16	P54113	591 aa	Known RBP	3.36	□□□□□ -1.87
SQS1	YNL224C	VPS9	P54787	451 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	MSC3	Q05812	728 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	VID22	Q05934	901 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	OMS1	Q06668	471 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	GRE1	Q08969	168 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	HFI1	Q12060	488 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	ATP16	Q12165	160 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	LDB17	Q12342	491 aa		3.36	□□□□□ -1.87
SQS1	YNL224C	SIR3	P06701	978 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	CHS2	P14180	963 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	CLN2	P20438	545 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	PRI2	P20457	528 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	OSM1	P21375	501 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	PTP1	P25044	335 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	EMC1	P25574	760 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	DBP7	P36120	742 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	CAF4	P36130	643 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	MRPL10	P36520	322 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	OSH7	P38755	437 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	NPR2	P39923	615 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	YIL001W	P40560	513 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	PMT3	P47190	753 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	FAA4	P47912	694 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	AMA1	P50082	593 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	PBP1	P53297	722 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	MOT3	P54785	490 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	REC102	Q02721	264 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	RUB1	Q03919	77 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	YAP6	Q03935	383 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	RSF1	Q05043	376 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	SPH1	Q06160	661 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	YLR455W	Q06188	304 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	VAC14	Q06708	880 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	FAP7	Q12055	197 aa	Predicted RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	DIN7	Q12086	430 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	ARP7	Q12406	477 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	REP1	P03871	373 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	ADE3	P07245	946 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	NFT1	P0CE68	1218 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	STE12	P13574	688 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	YAK1	P14680	807 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	FRS1	P15624	595 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	TUP1	P16649	713 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	3.35	□□□□□ -1.87	not detected
SQS1	YNL224C	DAL7	P21826	554 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	DPB2	P24482	689 aa	Predicted RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	STE50	P25344	346 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	RRT12	P25381	491 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	BUD23	P25627	275 aa	Predicted RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	SEC1	P30619	724 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	FUN26	P31381	517 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	RPD3	P32561	433 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	GDA1	P32621	518 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	DUT1	P33317	147 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	SPT23	P35210	1082 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	KES1	P35844	434 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	MRPL7	P36519	292 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	EGD2	P38879	174 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	STT3	P39007	718 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	RPS26A	P39938	119 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	RPS26B	P39939	119 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	QRI7	P43122	407 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	FAR7	P43592	221 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	TMA22	P47089	198 aa	Predicted RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	YJR111C	P47148	283 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	ARH1	P48360	493 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	RTA1	P53047	317 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	CGR1	P53188	120 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	UTP8	P53276	713 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	PGA2	P53903	129 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	ARP4	P80428	489 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	SMA1	Q02651	245 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	OAZ1	Q02803	292 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	SEG1	Q04279	960 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	DPL1	Q05567	589 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	HCR1	Q05775	265 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	VPS38	Q05919	439 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	DIS3	Q08162	1001 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	PDH1	Q12428	516 aa	Known RBP	3.35	□□□□□ -1.87
SQS1	YNL224C	ARP6	Q12509	438 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	SET6	Q12529	373 aa		3.35	□□□□□ -1.87
SQS1	YNL224C	MET17	P06106	444 aa		3.34	□□□□□ -1.87
SQS1	YNL224C	MSS116	P15424	664 aa	Known RBP	3.34	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms