RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W PXA1P41909 870 aa2.21□□□□□ -2.06
SIR4YDR227W JJJ3P47138 172 aa2.21□□□□□ -2.06
SIR4YDR227W NOP6Q07623 225 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W GET3Q12154 354 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W CDC36P06100 191 aaPredicted RBP2.21□□□□□ -2.06
SIR4YDR227W ARG82P07250 355 aa2.21□□□□□ -2.06
SIR4YDR227W YHL017WP38745 532 aa2.21□□□□□ -2.06
SIR4YDR227W IES5P40060 125 aa2.21□□□□□ -2.06
SIR4YDR227W CNM67P53865 581 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W HXT15P54854 567 aa2.21□□□□□ -2.06
SIR4YDR227W REX2P54964 269 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W EEB1Q02891 456 aa2.21□□□□□ -2.06
SIR4YDR227W PRM15Q03262 622 aa2.21□□□□□ -2.06
SIR4YDR227W ERB1Q04660 807 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W FRA1Q07825 749 aa2.21□□□□□ -2.06
SIR4YDR227W MRPL33P20084 86 aa2.21□□□□□ -2.06
SIR4YDR227W NAR1P23503 491 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W RIT1P23796 513 aa2.21□□□□□ -2.06
SIR4YDR227W RRP7P25368 297 aaPredicted RBP2.21□□□□□ -2.06
SIR4YDR227W ADY2P25613 283 aa2.21□□□□□ -2.06
SIR4YDR227W ATP11P32453 318 aa2.21□□□□□ -2.06
SIR4YDR227W CBF5P33322 483 aaKnown RBP RIP-Chip data2.21□□□□□ -2.06not detected
SIR4YDR227W STO1P34160 861 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W BMH2P34730 273 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W RRP1P35178 278 aaPredicted RBP2.21□□□□□ -2.06
SIR4YDR227W MMS21P38632 267 aa2.21□□□□□ -2.06
SIR4YDR227W VPS45P38932 577 aa2.21□□□□□ -2.06
SIR4YDR227W CCT7P42943 550 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W YJR124CP47159 448 aa2.21□□□□□ -2.06
SIR4YDR227W YNL247WP53852 767 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W RAD30Q04049 632 aa2.21□□□□□ -2.06
SIR4YDR227W ADY4Q05955 493 aa2.21□□□□□ -2.06
SIR4YDR227W ENT4Q07872 247 aa2.21□□□□□ -2.06
SIR4YDR227W RLP24Q07915 199 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W RPS21BQ3E754 87 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W GCD1P09032 578 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W RPS21AP0C0V8 87 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W GLN4P13188 809 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W PPH22P23595 377 aa2.2□□□□□ -2.06
SIR4YDR227W VMA3P25515 160 aa2.2□□□□□ -2.06
SIR4YDR227W CSM1P25651 190 aa2.2□□□□□ -2.06
SIR4YDR227W KRE6P32486 720 aa2.2□□□□□ -2.06
SIR4YDR227W GLY1P37303 387 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W MAL32P38158 584 aa2.2□□□□□ -2.06
SIR4YDR227W VPS41P38959 992 aa2.2□□□□□ -2.06
SIR4YDR227W TCB2P48231 1178 aa2.2□□□□□ -2.06
SIR4YDR227W YGL114WP53134 725 aa2.2□□□□□ -2.06
SIR4YDR227W MAL12P53341 584 aa2.2□□□□□ -2.06
SIR4YDR227W RHO5P53879 331 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W ARP4P80428 489 aa2.2□□□□□ -2.06
SIR4YDR227W SSL2Q00578 843 aa2.2□□□□□ -2.06
SIR4YDR227W ADI1Q03677 179 aa2.2□□□□□ -2.06
SIR4YDR227W RSC3Q06639 885 aa2.2□□□□□ -2.06
SIR4YDR227W AVO1Q08236 1176 aa2.2□□□□□ -2.06
SIR4YDR227W RKM1Q08961 583 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W YOR022CQ12204 715 aa2.2□□□□□ -2.06
SIR4YDR227W CDC21P06785 304 aa2.2□□□□□ -2.06
SIR4YDR227W URK1P27515 501 aa2.2□□□□□ -2.06
SIR4YDR227W KRE2P27809 442 aa2.2□□□□□ -2.06
SIR4YDR227W REI1P38344 393 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W YMR262WP38430 313 aa2.2□□□□□ -2.06
SIR4YDR227W GND1P38720 489 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W LNP1P38878 278 aa2.2□□□□□ -2.06
SIR4YDR227W YHR202WP38887 602 aa2.2□□□□□ -2.06
SIR4YDR227W LEM3P42838 414 aa2.2□□□□□ -2.06
SIR4YDR227W GSM1P42950 618 aa2.2□□□□□ -2.06
SIR4YDR227W NUP85P46673 744 aa2.2□□□□□ -2.06
SIR4YDR227W YGL242CP53066 181 aa2.2□□□□□ -2.06
SIR4YDR227W GPD1Q00055 391 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W NPL3Q01560 414 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
SIR4YDR227W GSF2Q04697 403 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W UTP21Q06078 939 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W DCI1Q08558 271 aa2.2□□□□□ -2.06
SIR4YDR227W RTN2Q12443 393 aa2.2□□□□□ -2.06
SIR4YDR227W SPO24Q3E752 67 aa2.2□□□□□ -2.06
SIR4YDR227W VAS1P07806 1104 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W POL30P15873 258 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W ADP1P25371 1049 aa2.2□□□□□ -2.06
SIR4YDR227W HSP104P31539 908 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W TYE7P33122 291 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W ATG19P35193 415 aa2.2□□□□□ -2.06
SIR4YDR227W DUO1P53168 247 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W TGL2P54857 326 aa2.2□□□□□ -2.06
SIR4YDR227W TSR1Q07381 788 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W DNL4Q08387 944 aaPredicted RBP2.2□□□□□ -2.06
SIR4YDR227W YOR296WQ08748 1289 aa2.2□□□□□ -2.06
SIR4YDR227W ALG6Q12001 544 aaKnown RBP2.2□□□□□ -2.06
SIR4YDR227W RRI2Q12348 645 aa2.2□□□□□ -2.06
SIR4YDR227W DIF1O13577 133 aa2.19□□□□□ -2.06
SIR4YDR227W MET8P15807 274 aa2.19□□□□□ -2.06
SIR4YDR227W CBF1P17106 351 aa2.19□□□□□ -2.06
SIR4YDR227W PWP1P21304 576 aaKnown RBP2.19□□□□□ -2.06
SIR4YDR227W MSN1P22148 382 aa2.19□□□□□ -2.06
SIR4YDR227W STE11P23561 717 aa2.19□□□□□ -2.06
SIR4YDR227W SGF29P25554 259 aa2.19□□□□□ -2.06
SIR4YDR227W PPZ1P26570 692 aa2.19□□□□□ -2.06
SIR4YDR227W ITR1P30605 584 aa2.19□□□□□ -2.06
SIR4YDR227W MRE11P32829 692 aa2.19□□□□□ -2.06
SIR4YDR227W NIP100P33420 868 aa2.19□□□□□ -2.06
SIR4YDR227W RKM3P38222 552 aa2.19□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms