RNA–Protein interactions for RNA: ENSMUST00000027988.7

Ccdc3-201, Transcript of Coiled-coil domain-containing protein 3, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc3, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3-201ENSMUST00000027988 Defa21Q8C1P2 93 aa12.21□□□□□ -0.45
Ccdc3-201ENSMUST00000027988 FlnbQ80X90 2602 aaKnown RBP12.21□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Lamtor3O88653 124 aa12.21□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Dnah10D3YYQ8 4591 aa12.21□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Gm17509Q9CZ61 145 aa12.2□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Reg3bP35230 175 aa12.19□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 9530003J23RikQ8BM26 151 aa12.19□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Gm17689B3GLJ4 109 aa12.18□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Cd164Q9R0L9 197 aa12.18□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Phxr5P08399 672 aa12.18□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Defa4P28311 92 aa12.18□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Serp2Q6TAW2 65 aa12.18□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 VwfQ8CIZ8 2813 aa12.17□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Igkv4-92A0A0B4J1I2 117 aa12.16□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Gm17577J3QNF7 156 aa12.16□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Dnah7bL7N1Y0 4068 aa12.16□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Igkv8-34A0A0G2JDU0 121 aa12.15□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Gm7137J3QMW1 236 aa12.15□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Tmem243B2RVB9 118 aa12.15□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Cox7b2Q9D2H1 82 aa12.15□□□□□ -0.46
Ccdc3-201ENSMUST00000027988 Ubl5Q9EPV8 73 aa12.14□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 9430015G10RikA2ASP7 199 aa12.13□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Igkv1-110A0A0B4J1I0 119 aa12.12□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Gm36176A0A1W2P8D5 158 aa12.12□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Sprr4Q8CGN8 76 aa12.12□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Elof1P60003 83 aa12.11□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Nsd1O88491 2588 aaKnown RBP12.1□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Camk2n2Q78WH7 79 aa12.1□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Defa23Q5G866 93 aa12.09□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Fam19a3Q7TPG6 132 aa12.09□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Igkv8-28A0A0G2JE47 121 aa12.09□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 AplnQ9R0R4 77 aa12.09□□□□□ -0.47
Ccdc3-201ENSMUST00000027988 Dnah14A0A140LIJ4 4489 aa12.08□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Rbm3O89086 153 aaKnown RBP12.07□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 A830005F24RikQ8BRT5 167 aa12.07□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Ighv2-5A0A0A6YY69 116 aa12.07□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Inafm2A0A1L1STD6 152 aa12.07□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Fn1P11276 2477 aaKnown RBP12.06□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Igkv1-122A0A140T8M9 119 aa12.06□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 E130114P18RikF6S0S7 154 aa12.06□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Trav14-1A0A0G2JF94 121 aa12.05□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Vpreb2P13373 142 aa12.03□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 Csmd3Q80T79 3707 aa12.02□□□□□ -0.48
Ccdc3-201ENSMUST00000027988 A330070K13RikQ8CA53 115 aa12.02□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 9530053A07RikE9PVG8 2581 aa12.02□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Pou2af1Q64693 256 aa12.02□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Dnah6E9Q0B6 4144 aa12.01□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Cdk2ap2Q9CPY4 127 aa12.01□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 B230307C23RikQ8BLB2 64 aa12□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Dnah1E9Q8T7 4250 aa11.99□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Fam168bQ80XQ8 194 aa11.98□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 BC048502Q80Y74 154 aa11.98□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 A0A286YE02 88 aa11.98□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Smlr1J3QMJ4 66 aa11.98□□□□□ -0.49
Ccdc3-201ENSMUST00000027988 Igkv3-2A0A075B5P0 119 aa11.96□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Tmem258P61166 79 aa11.96□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Gm7276Q3TYW4 209 aa11.95□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 BikO70337 150 aa11.94□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Gm16485Q8C4B7 115 aa11.94□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 GhrhP16043 103 aa11.94□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Dnah17Q69Z23 4481 aa11.92□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Gm5617Q91VN2 117 aa11.92□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Ighv2-2A0A075B5P8 116 aa11.92□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 P01821 116 aa11.92□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Pde6gP09174 87 aa11.92□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 P84750 121 aa11.9□□□□□ -0.5
Ccdc3-201ENSMUST00000027988 Gm16181B0V2H2 73 aa11.89□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 SnurfQ9WU12 71 aa11.89□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Gm19935A0A1B0GSF9 52 aa11.88□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 6430550D23RikE9Q1X6 194 aa11.87□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Sprr1aQ62266 144 aa11.87□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Rps28P62858 69 aaKnown RBP11.86□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Sslp1Q3UN54 99 aa11.85□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 TgO08710 2766 aa11.85□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Sfta2E9PXB6 77 aa11.85□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Gm11011D3Z3L9 86 aa11.83□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 P06320 134 aa11.83□□□□□ -0.51
Ccdc3-201ENSMUST00000027988 Sprr2jO70561 109 aa11.83□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Megf8P60882 2789 aa11.83□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Cox6a2P43023 97 aa11.83□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Dmac1Q9CQ00 111 aa11.83□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Ndufc1Q9CQY9 76 aa11.82□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 C130032M10RikQ8C888 123 aa11.82□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 PscaP57096 123 aa11.81□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Brk1Q91VR8 75 aa11.81□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Prr15lQ8JZM2 100 aa11.8□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Fam19a5Q91WE9 132 aa11.8□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 HrnrQ8VHD8 2496 aa11.8□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Wfdc6bF6ULY1 148 aa11.8□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Vpreb1P13372 142 aa11.8□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Gm9508A0A1W2P7W0 230 aa11.79□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Wfdc17Q5SSJ1 76 aa11.79□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Samd13D3YUG0 102 aa11.79□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Gm11627A6PWP4 55 aa11.78□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Defb40Q70KL2 73 aa11.78□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 Igkv3-12A0A140T8P0 119 aa11.77□□□□□ -0.52
Ccdc3-201ENSMUST00000027988 A930002H24RikQ8C8Y3 163 aa11.76□□□□□ -0.53
Ccdc3-201ENSMUST00000027988 Gm44790A0A0N4SV91 103 aa11.75□□□□□ -0.53
Ccdc3-201ENSMUST00000027988 Obox2E9PXV9 151 aa11.75□□□□□ -0.53
Ccdc3-201ENSMUST00000027988 Q8BT88 171 aa11.74□□□□□ -0.53
Retrieved 100 of 22,080 RNA–protein pairs in 49.1 ms