RNA–Protein interactions for RNA: ENSMUST00000027988.7

Ccdc3-201, Transcript of Coiled-coil domain-containing protein 3, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc3, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3-201ENSMUST00000027988 NischQ80TM9 1593 aa35.21■■■■□ 3.23
Ccdc3-201ENSMUST00000027988 Gm35339A0A140LHH9 1649 aa34.4■■■■□ 3.1
Ccdc3-201ENSMUST00000027988 Abcc9P70170 1546 aa34.19■■■■□ 3.06
Ccdc3-201ENSMUST00000027988 Abcc8B2RUS7 1588 aa33.38■■■□□ 2.93
Ccdc3-201ENSMUST00000027988 Rhox8Q6VSS7 320 aa32.97■■■□□ 2.87
Ccdc3-201ENSMUST00000027988 Rtl1Q7M732 1744 aa32.36■■■□□ 2.77
Ccdc3-201ENSMUST00000027988 Ccdc180J3QNE4 1664 aa31.92■■■□□ 2.7
Ccdc3-201ENSMUST00000027988 Zcchc6Q5BLK4 1491 aaKnown RBP31.5■■■□□ 2.63
Ccdc3-201ENSMUST00000027988 ScribQ80U72 1612 aa31.11■■■□□ 2.57
Ccdc3-201ENSMUST00000027988 Dcaf1Q80TR8 1506 aa30.97■■■□□ 2.55
Ccdc3-201ENSMUST00000027988 Rb1cc1Q9ESK9 1588 aa30.89■■■□□ 2.54
Ccdc3-201ENSMUST00000027988 Ccdc136Q3TVA9 1136 aa30.64■■■□□ 2.5
Ccdc3-201ENSMUST00000027988 Kdm5dQ62240 1548 aa30.53■■■□□ 2.48
Ccdc3-201ENSMUST00000027988 Baz1aO88379 1555 aa30.47■■■□□ 2.47
Ccdc3-201ENSMUST00000027988 Rpgrip1Q9EPQ2 1331 aa30.42■■■□□ 2.46
Ccdc3-201ENSMUST00000027988 HrcG5E8J6 738 aa30.39■■■□□ 2.46
Ccdc3-201ENSMUST00000027988 Ehmt2Q9Z148 1263 aaKnown RBP30.38■■■□□ 2.45
Ccdc3-201ENSMUST00000027988 Acin1Q9JIX8 1338 aaKnown RBP30.21■■■□□ 2.43
Ccdc3-201ENSMUST00000027988 NacadQ5SWP3 1504 aa30.09■■■□□ 2.41
Ccdc3-201ENSMUST00000027988 Trim41Q5NCC3 630 aa29.94■■■□□ 2.38
Ccdc3-201ENSMUST00000027988 Smarca2Q6DIC0 1577 aa29.85■■■□□ 2.37
Ccdc3-201ENSMUST00000027988 Crybg2B7ZCC2 1516 aa29.67■■■□□ 2.34
Ccdc3-201ENSMUST00000027988 Cep164Q5DU05 1446 aa29.52■■■□□ 2.32
Ccdc3-201ENSMUST00000027988 Sycp2Q9CUU3 1500 aa29.5■■■□□ 2.31
Ccdc3-201ENSMUST00000027988 Chic1Q8CBW7 227 aa29.28■■■□□ 2.28
Ccdc3-201ENSMUST00000027988 Rsf1E9PWW9 1441 aaKnown RBP29.25■■■□□ 2.27
Ccdc3-201ENSMUST00000027988 Cecr2E9Q2Z1 1453 aa29.23■■■□□ 2.27
Ccdc3-201ENSMUST00000027988 Cngb1E1AZ71 1325 aa29.21■■■□□ 2.27
Ccdc3-201ENSMUST00000027988 Pcgf6Q99NA9 353 aa29.18■■■□□ 2.26
Ccdc3-201ENSMUST00000027988 Gab3Q8BSM5 595 aa29.08■■■□□ 2.25
Ccdc3-201ENSMUST00000027988 Ccdc88bQ4QRL3 1481 aa29.05■■■□□ 2.24
Ccdc3-201ENSMUST00000027988 Brd4Q9ESU6 1400 aaKnown RBP29.03■■■□□ 2.24
Ccdc3-201ENSMUST00000027988 Synj1Q8CHC4 1574 aa28.97■■■□□ 2.23
Ccdc3-201ENSMUST00000027988 BicraF8VPZ9 1578 aa28.94■■■□□ 2.22
Ccdc3-201ENSMUST00000027988 Golga3P55937 1487 aa28.91■■■□□ 2.22
Ccdc3-201ENSMUST00000027988 Supt5hO55201 1082 aaKnown RBP28.77■■■□□ 2.2
Ccdc3-201ENSMUST00000027988 CftrP26361 1476 aa28.7■■■□□ 2.18
Ccdc3-201ENSMUST00000027988 Esf1Q3V1V3 845 aaKnown RBP28.58■■■□□ 2.17
Ccdc3-201ENSMUST00000027988 Top2bQ64511 1612 aa28.58■■■□□ 2.17
Ccdc3-201ENSMUST00000027988 Mier1Q5UAK0 511 aa28.48■■■□□ 2.15
Ccdc3-201ENSMUST00000027988 Cttnbp2B9EJA2 1648 aa28.44■■■□□ 2.14
Ccdc3-201ENSMUST00000027988 Cc2d2aQ8CFW7 1633 aa28.42■■■□□ 2.14
Ccdc3-201ENSMUST00000027988 Zeb1Q64318 1117 aa28.38■■■□□ 2.13
Ccdc3-201ENSMUST00000027988 Smarca4Q3TKT4 1613 aaKnown RBP28.26■■■□□ 2.11
Ccdc3-201ENSMUST00000027988 NefmP08553 848 aa28.19■■■□□ 2.1
Ccdc3-201ENSMUST00000027988 Rapgef2Q8CHG7 1496 aa28.14■■■□□ 2.1
Ccdc3-201ENSMUST00000027988 Top2aQ01320 1528 aaKnown RBP28.05■■■□□ 2.08
Ccdc3-201ENSMUST00000027988 Fmn1Q05860 1466 aa28.05■■■□□ 2.08
Ccdc3-201ENSMUST00000027988 Neurod1Q60867 357 aa28.05■■■□□ 2.08
Ccdc3-201ENSMUST00000027988 UbtfP25976 765 aaKnown RBP28.04■■■□□ 2.08
Ccdc3-201ENSMUST00000027988 Sall2Q9QX96 1004 aa28.02■■■□□ 2.08
Ccdc3-201ENSMUST00000027988 Cep162Q6ZQ06 1403 aa27.93■■■□□ 2.06
Ccdc3-201ENSMUST00000027988 Myt1lP97500 1187 aa27.91■■■□□ 2.06
Ccdc3-201ENSMUST00000027988 Iqgap2Q3UQ44 1575 aa27.9■■■□□ 2.06
Ccdc3-201ENSMUST00000027988 Aebp2Q9Z248 504 aaKnown RBP27.71■■■□□ 2.03
Ccdc3-201ENSMUST00000027988 Npm2Q80W85 207 aa27.68■■■□□ 2.02
Ccdc3-201ENSMUST00000027988 Eif4g1Q6NZJ6 1600 aaKnown RBP27.68■■■□□ 2.02
Ccdc3-201ENSMUST00000027988 Plekhg3Q4VAC9 1341 aa27.6■■■□□ 2.01
Ccdc3-201ENSMUST00000027988 Atad2bE9Q166 1460 aaKnown RBP27.6■■■□□ 2.01
Ccdc3-201ENSMUST00000027988 Clip1Q922J3 1391 aa27.55■■■□□ 2
Ccdc3-201ENSMUST00000027988 TnnQ80Z71 1560 aa27.54■■■□□ 2
Ccdc3-201ENSMUST00000027988 Wdr66E9Q743 1299 aa27.54■■■□□ 2
Ccdc3-201ENSMUST00000027988 Ppargc1bQ8VHJ7 1014 aa27.5■■□□□ 1.99
Ccdc3-201ENSMUST00000027988 Las1lA2BE28 776 aaKnown RBP27.47■■□□□ 1.99
Ccdc3-201ENSMUST00000027988 PtprkP35822 1457 aa27.46■■□□□ 1.99
Ccdc3-201ENSMUST00000027988 Arhgap35Q91YM2 1499 aa27.42■■□□□ 1.98
Ccdc3-201ENSMUST00000027988 Ncapd3Q6ZQK0 1506 aa27.38■■□□□ 1.97
Ccdc3-201ENSMUST00000027988 Frmpd1A2AKB4 1549 aa27.36■■□□□ 1.97
Ccdc3-201ENSMUST00000027988 Pds5bQ4VA53 1446 aaKnown RBP27.35■■□□□ 1.97
Ccdc3-201ENSMUST00000027988 Arap1Q4LDD4 1452 aa27.3■■□□□ 1.96
Ccdc3-201ENSMUST00000027988 ClspnQ80YR7 1315 aa27.29■■□□□ 1.96
Ccdc3-201ENSMUST00000027988 TonslQ6NZL6 1363 aa27.29■■□□□ 1.96
Ccdc3-201ENSMUST00000027988 Il27Q8K3I6 234 aa27.28■■□□□ 1.96
Ccdc3-201ENSMUST00000027988 Wdr62Q3U3T8 1523 aa27.27■■□□□ 1.96
Ccdc3-201ENSMUST00000027988 NrkQ9R0G8 1455 aa27.26■■□□□ 1.95
Ccdc3-201ENSMUST00000027988 Ap3b1Q9Z1T1 1105 aa27.24■■□□□ 1.95
Ccdc3-201ENSMUST00000027988 Anks4bQ8K3X6 423 aa27.23■■□□□ 1.95
Ccdc3-201ENSMUST00000027988 Lamc3Q9R0B6 1581 aa27.22■■□□□ 1.95
Ccdc3-201ENSMUST00000027988 Kif15Q6P9L6 1387 aa27.15■■□□□ 1.94
Ccdc3-201ENSMUST00000027988 Eea1Q8BL66 1411 aa27.14■■□□□ 1.94
Ccdc3-201ENSMUST00000027988 Unc13aQ4KUS2 1712 aa27.13■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Csrnp3P59055 597 aa27.12■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Shroom4Q1W617 1475 aa27.11■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Arhgef5E9Q7D5 1581 aa27.11■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Camsap1A2AHC3 1581 aa27.09■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Nop58Q6DFW4 536 aaKnown RBP27.09■■□□□ 1.93
Ccdc3-201ENSMUST00000027988 Kdm5bQ80Y84 1544 aa27.07■■□□□ 1.92
Ccdc3-201ENSMUST00000027988 Setd5Q5XJV7 1441 aa27.07■■□□□ 1.92
Ccdc3-201ENSMUST00000027988 Cdk11bP24788 784 aaKnown RBP27.05■■□□□ 1.92
Ccdc3-201ENSMUST00000027988 Eid3Q3V124 375 aa27.04■■□□□ 1.92
Ccdc3-201ENSMUST00000027988 1700123L14RikQ3V2K7 440 aa26.97■■□□□ 1.91
Ccdc3-201ENSMUST00000027988 Map3k1P53349 1493 aa26.96■■□□□ 1.91
Ccdc3-201ENSMUST00000027988 AqrQ8CFQ3 1481 aaKnown RBP26.96■■□□□ 1.91
Ccdc3-201ENSMUST00000027988 Ccdc18Q640L5 1455 aa26.94■■□□□ 1.9
Ccdc3-201ENSMUST00000027988 Grin2bQ01097 1482 aa26.93■■□□□ 1.9
Ccdc3-201ENSMUST00000027988 Tiam1Q60610 1591 aa26.92■■□□□ 1.9
Ccdc3-201ENSMUST00000027988 Ercc6F8VPZ5 1481 aa26.91■■□□□ 1.9
Ccdc3-201ENSMUST00000027988 Mroh2bQ7M6Y6 1581 aa26.88■■□□□ 1.89
Ccdc3-201ENSMUST00000027988 Ankrd26Q811D2 1581 aa26.87■■□□□ 1.89
Ccdc3-201ENSMUST00000027988 Naip1Q9QWK5 1403 aa26.85■■□□□ 1.89
Retrieved 100 of 22,080 RNA–protein pairs in 54.9 ms