RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	PSF3	Q12146	194 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	RAD1	P06777	1100 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	PYC1	P11154	1178 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	THR4	P16120	514 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	SPO12	P17123	173 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	IMG2	P25642	146 aa	Predicted RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	RPT3	P33298	428 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	PTK1	P36002	662 aa	Predicted RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	BIT2	P38346	545 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	SMF1	P38925	575 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	YMR124W	P39523	943 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	CSM2	P40465	213 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	VTC2	P43585	828 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	AIP1	P46680	615 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	BUL1	P48524	976 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	PIP2	P52960	996 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	YGL138C	P53122	345 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	TEX1	P53851	422 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	VTC3	Q02725	835 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	SKY1	Q03656	742 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	SND1	Q04007	877 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	SYF1	Q04048	859 aa	Predicted RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	NOP6	Q07623	225 aa	Known RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	ISA1	Q07821	250 aa	Predicted RBP	4.88	□□□□□ -1.63
EAR1	YMR171C	YAP7	Q08182	245 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	PLP2	Q12017	286 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	YPR027C	Q12079	277 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	BUG1	Q12191	341 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	PMD1	P32634	1753 aa		4.88	□□□□□ -1.63
EAR1	YMR171C	TRP4	P07285	380 aa	Predicted RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	RAD57	P25301	460 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	ECM32	P32644	1121 aa	Known RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	YKU70	P32807	602 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	APT2	P36973	181 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	TOM71	P38825	639 aa	Known RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	VPS8	P39702	1274 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	UBP5	P39944	805 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	LYS14	P40971	790 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	MIC19	P43594	170 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	SGM1	P47166	707 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	NOP15	P53927	220 aa	Predicted RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	YNL034W	P53963	612 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	YNL018C	P53976	612 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	TGL2	P54857	326 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	REC102	Q02721	264 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	YMR210W	Q03649	449 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	HMO1	Q03973	246 aa	Known RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	MYO5	Q04439	1219 aa	Known RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	CLF1	Q12309	687 aa	Predicted RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	RAD61	Q99359	647 aa		4.87	□□□□□ -1.63
EAR1	YMR171C	FKS1	P38631	1876 aa	Known RBP	4.87	□□□□□ -1.63
EAR1	YMR171C	PMA1	P05030	918 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	GLN4	P13188	809 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	RPC25	P35718	212 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	OLA1	P38219	394 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	VID27	P40157	782 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	YNL195C	P40168	261 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	PXA1	P41909	870 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	ATG36	P46983	293 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	PHO23	P50947	330 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	UBA2	P52488	636 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	RPT6	Q01939	405 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	NGL3	Q03210	505 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	GAD1	Q04792	585 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	YPS7	Q06325	596 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	TMA7	Q3E764	64 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	TUF1	P02992	437 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	ERG6	P25087	383 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	RPC53	P25441	422 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	CTS1	P29029	562 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	HEM12	P32347	362 aa	Predicted RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	TRZ1	P36159	838 aa	Predicted RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	STT3	P39007	718 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	IES1	P43579	692 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	YFH7	P43591	353 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	SPC105	P53148	917 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	RPT4	P53549	437 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	IRC4	Q03036	179 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	UBX2	Q04228	584 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	SOV1	Q04748	898 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	STE23	Q06010	1027 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	SMD2	Q06217	110 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	VHS3	Q08438	674 aa		4.86	□□□□□ -1.63
EAR1	YMR171C	SLK19	Q08581	821 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	YPL225W	Q08971	146 aa	Known RBP	4.86	□□□□□ -1.63
EAR1	YMR171C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
EAR1	YMR171C	FLO1	P32768	1537 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	FOB1	O13329	566 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	RPS17A	P02407	136 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	PPR1	P07272	904 aa	Predicted RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	RPS17B	P14127	136 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	COX11	P19516	300 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	RNR1	P21524	888 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	HXT1	P32465	570 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	CCT3	P39077	534 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	TRS85	P46944	698 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	YJR079W	P47126	109 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	RNR4	P49723	345 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	MUP1	P50276	574 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	COX18	P53239	316 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms