RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SOK2P53438 785 aaPredicted RBP6.25□□□□□ -1.41
DEF1YKL054C ARX1Q03862 593 aaKnown RBP6.25□□□□□ -1.41
DEF1YKL054C YPR172WQ06608 200 aa6.25□□□□□ -1.41
DEF1YKL054C VAM6Q07468 1049 aa6.25□□□□□ -1.41
DEF1YKL054C RIX7Q07844 837 aaKnown RBP6.25□□□□□ -1.41
DEF1YKL054C SUL2Q12325 893 aa6.25□□□□□ -1.41
DEF1YKL054C MDH1P17505 334 aaKnown RBP RIP-Chip data6.25□□□□□ -1.41not detected
DEF1YKL054C RPC82P32349 654 aa6.25□□□□□ -1.41
DEF1YKL054C YEL043WP32618 956 aa6.25□□□□□ -1.41
DEF1YKL054C ECM21P38167 1117 aaKnown RBP6.25□□□□□ -1.41
DEF1YKL054C RRT14P40470 206 aa6.25□□□□□ -1.41
DEF1YKL054C SPO1P53541 631 aa6.25□□□□□ -1.41
DEF1YKL054C YPR196WQ06595 470 aa6.25□□□□□ -1.41
DEF1YKL054C FBP1P09201 348 aa6.24□□□□□ -1.41
DEF1YKL054C PCK1P10963 549 aa6.24□□□□□ -1.41
DEF1YKL054C STE12P13574 688 aa6.24□□□□□ -1.41
DEF1YKL054C SNT1P25357 1226 aa6.24□□□□□ -1.41
DEF1YKL054C POA1P38218 177 aa6.24□□□□□ -1.41
DEF1YKL054C BUD8P41698 603 aa6.24□□□□□ -1.41
DEF1YKL054C OGG1P53397 376 aaPredicted RBP6.24□□□□□ -1.41
DEF1YKL054C YMR111CQ04461 462 aaPredicted RBP6.24□□□□□ -1.41
DEF1YKL054C MGR3Q04472 501 aa6.24□□□□□ -1.41
DEF1YKL054C ADY4Q05955 493 aa6.24□□□□□ -1.41
DEF1YKL054C SOD2P00447 233 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-LR1P0C2J4 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-FP0CX61 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-GR2P0CX62 438 aa6.23□□□□□ -1.41
DEF1YKL054C DAP2P18962 818 aa6.23□□□□□ -1.41
DEF1YKL054C CPR2P23285 205 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-CP25383 438 aa6.23□□□□□ -1.41
DEF1YKL054C RSC6P25632 483 aa6.23□□□□□ -1.41
DEF1YKL054C APE3P37302 537 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C YHR097CP38809 366 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C NGL2Q03264 515 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C TY2A-DR2Q03483 438 aa6.23□□□□□ -1.41
DEF1YKL054C CHS5Q12114 671 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C NBP2Q12163 236 aa6.23□□□□□ -1.41
DEF1YKL054C RPN5Q12250 445 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C TY2A-BQ12260 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-OR2Q12293 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-DR1Q12392 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-OR1Q12439 438 aa6.23□□□□□ -1.41
DEF1YKL054C TY2A-DR3Q99303 438 aa6.23□□□□□ -1.41
DEF1YKL054C ERV1P27882 189 aa6.23□□□□□ -1.41
DEF1YKL054C TYE7P33122 291 aaPredicted RBP6.23□□□□□ -1.41
DEF1YKL054C GEX2P36173 615 aa6.23□□□□□ -1.41
DEF1YKL054C CST26P38226 397 aa6.23□□□□□ -1.41
DEF1YKL054C MEF2P39677 819 aa6.23□□□□□ -1.41
DEF1YKL054C ATF1P40353 525 aa6.23□□□□□ -1.41
DEF1YKL054C MKT1P40850 830 aaKnown RBP6.23□□□□□ -1.41
DEF1YKL054C LAM5P43560 674 aa6.23□□□□□ -1.41
DEF1YKL054C RAD17P48581 401 aa6.23□□□□□ -1.41
DEF1YKL054C CUL3P53202 744 aa6.23□□□□□ -1.41
DEF1YKL054C INN1P53901 409 aa6.23□□□□□ -1.41
DEF1YKL054C YLL054CQ12244 843 aa6.23□□□□□ -1.41
DEF1YKL054C SPE4Q12455 300 aa6.23□□□□□ -1.41
DEF1YKL054C YCR051WP25631 222 aa6.22□□□□□ -1.41
DEF1YKL054C MPT5P39016 859 aaKnown RBP RIP-Chip data6.22□□□□□ -1.41not detected
DEF1YKL054C SSU1P41930 458 aa6.22□□□□□ -1.41
DEF1YKL054C GSM1P42950 618 aa6.22□□□□□ -1.41
DEF1YKL054C STU2P46675 888 aa6.22□□□□□ -1.41
DEF1YKL054C AAD10P47182 288 aa6.22□□□□□ -1.41
DEF1YKL054C EXG2P52911 562 aa6.22□□□□□ -1.41
DEF1YKL054C TEL2P53038 688 aa6.22□□□□□ -1.41
DEF1YKL054C TOF2Q02208 771 aa6.22□□□□□ -1.41
DEF1YKL054C ADA2Q02336 434 aa6.22□□□□□ -1.41
DEF1YKL054C ASM4Q05166 528 aa6.22□□□□□ -1.41
DEF1YKL054C DON1Q05610 365 aa6.22□□□□□ -1.41
DEF1YKL054C ARV1Q06541 321 aa6.22□□□□□ -1.41
DEF1YKL054C MDY2Q12285 212 aa6.22□□□□□ -1.41
DEF1YKL054C YLR302CO13544 120 aa6.22□□□□□ -1.41
DEF1YKL054C AI1P03875 834 aa6.22□□□□□ -1.41
DEF1YKL054C HNM1P19807 563 aa6.22□□□□□ -1.41
DEF1YKL054C LRG1P35688 1017 aa6.22□□□□□ -1.41
DEF1YKL054C DAD2P36162 133 aa6.22□□□□□ -1.41
DEF1YKL054C ALG14P38242 237 aa6.22□□□□□ -1.41
DEF1YKL054C GIP2P40036 548 aa6.22□□□□□ -1.41
DEF1YKL054C CAB2P40506 365 aa6.22□□□□□ -1.41
DEF1YKL054C YDL183CP48569 320 aa6.22□□□□□ -1.41
DEF1YKL054C GCV2P49095 1034 aa6.22□□□□□ -1.41
DEF1YKL054C VPS4P52917 437 aa6.22□□□□□ -1.41
DEF1YKL054C DUS1P53759 423 aaKnown RBP6.22□□□□□ -1.41
DEF1YKL054C SSL1Q04673 461 aaPredicted RBP6.22□□□□□ -1.41
DEF1YKL054C DBP9Q06218 594 aaKnown RBP6.22□□□□□ -1.41
DEF1YKL054C YPL272CQ08984 517 aa6.22□□□□□ -1.41
DEF1YKL054C VCX1Q99385 411 aa6.22□□□□□ -1.41
DEF1YKL054C YRF1-4O13559 1382 aa6.22□□□□□ -1.41
DEF1YKL054C ERG8P24521 451 aa6.21□□□□□ -1.42
DEF1YKL054C PEP3P27801 918 aa6.21□□□□□ -1.42
DEF1YKL054C PRP45P28004 379 aaPredicted RBP6.21□□□□□ -1.42
DEF1YKL054C VPS17P32913 551 aa6.21□□□□□ -1.42
DEF1YKL054C CDS1P38221 457 aa6.21□□□□□ -1.42
DEF1YKL054C YSW1P38280 609 aa6.21□□□□□ -1.42
DEF1YKL054C LYS4P49367 693 aaPredicted RBP6.21□□□□□ -1.42
DEF1YKL054C VBA4Q04602 768 aaKnown RBP6.21□□□□□ -1.42
DEF1YKL054C ROY1Q04847 553 aa6.21□□□□□ -1.42
DEF1YKL054C GPB1Q08886 897 aa6.21□□□□□ -1.42
DEF1YKL054C ELG1Q12050 791 aa6.21□□□□□ -1.42
DEF1YKL054C RTC5Q12108 567 aaKnown RBP6.21□□□□□ -1.42
DEF1YKL054C SAC3P46674 1301 aa6.21□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms