RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C HER1Q12276 1246 aa2.53□□□□□ -2
PCF11YDR228C PUS4P48567 403 aaKnown RBP2.52□□□□□ -2.01
PCF11YDR228C SLD3P53135 668 aa2.52□□□□□ -2.01
PCF11YDR228C LSC1P53598 329 aaKnown RBP2.52□□□□□ -2.01
PCF11YDR228C ARA2Q04212 335 aa2.52□□□□□ -2.01
PCF11YDR228C SRL1Q08673 210 aa2.52□□□□□ -2.01
PCF11YDR228C LYS21Q12122 440 aaKnown RBP2.52□□□□□ -2.01
PCF11YDR228C YCR061WP25639 631 aa2.52□□□□□ -2.01
PCF11YDR228C YBR071WP38243 211 aa2.52□□□□□ -2.01
PCF11YDR228C STB5P38699 743 aa2.52□□□□□ -2.01
PCF11YDR228C EMP65P40085 556 aa2.52□□□□□ -2.01
PCF11YDR228C SPC105P53148 917 aa2.52□□□□□ -2.01
PCF11YDR228C COG2P53271 262 aa2.52□□□□□ -2.01
PCF11YDR228C SNU56Q03782 492 aaKnown RBP2.52□□□□□ -2.01
PCF11YDR228C YDL242WQ07746 117 aa2.52□□□□□ -2.01
PCF11YDR228C GET3Q12154 354 aaKnown RBP2.52□□□□□ -2.01
PCF11YDR228C GAL4P04386 881 aa2.51□□□□□ -2.01
PCF11YDR228C SES1P07284 462 aaKnown RBP2.51□□□□□ -2.01
PCF11YDR228C LYS20P48570 428 aaKnown RBP2.51□□□□□ -2.01
PCF11YDR228C VTC3Q02725 835 aa2.51□□□□□ -2.01
PCF11YDR228C UBP16Q02863 499 aa2.51□□□□□ -2.01
PCF11YDR228C PLM2Q04383 521 aa2.51□□□□□ -2.01
PCF11YDR228C TRI1Q05024 226 aa2.51□□□□□ -2.01
PCF11YDR228C ECM38Q05902 660 aaPredicted RBP2.51□□□□□ -2.01
PCF11YDR228C HOS1Q12214 470 aa2.51□□□□□ -2.01
PCF11YDR228C ENP1P38333 483 aaKnown RBP2.5□□□□□ -2.01
PCF11YDR228C TOM71P38825 639 aaKnown RBP2.5□□□□□ -2.01
PCF11YDR228C PEX15Q08215 383 aa2.5□□□□□ -2.01
PCF11YDR228C TRE2Q08693 809 aa2.5□□□□□ -2.01
PCF11YDR228C AIM44Q99299 758 aa2.5□□□□□ -2.01
PCF11YDR228C RTC1Q08281 1341 aa2.5□□□□□ -2.01
PCF11YDR228C ATO2P32907 282 aa2.5□□□□□ -2.01
PCF11YDR228C ARO9P38840 513 aaPredicted RBP2.5□□□□□ -2.01
PCF11YDR228C ERV46P39727 415 aa2.5□□□□□ -2.01
PCF11YDR228C SAP1P39955 897 aaKnown RBP2.5□□□□□ -2.01
PCF11YDR228C YIL152WP40455 235 aa2.5□□□□□ -2.01
PCF11YDR228C HOL1P53389 586 aa2.5□□□□□ -2.01
PCF11YDR228C YAT1P80235 687 aa2.5□□□□□ -2.01
PCF11YDR228C ENT2Q05785 613 aa2.5□□□□□ -2.01
PCF11YDR228C ATX2Q12067 313 aa2.5□□□□□ -2.01
PCF11YDR228C SLX4Q12098 748 aa2.5□□□□□ -2.01
PCF11YDR228C DBP10Q12389 995 aaKnown RBP2.5□□□□□ -2.01
PCF11YDR228C ILS1P09436 1072 aaKnown RBP2.49□□□□□ -2.01
PCF11YDR228C PRE2P30656 287 aaKnown RBP2.49□□□□□ -2.01
PCF11YDR228C MTG2P38860 518 aa2.49□□□□□ -2.01
PCF11YDR228C UBP7P40453 1071 aa2.49□□□□□ -2.01
PCF11YDR228C IDS2P46958 469 aa2.49□□□□□ -2.01
PCF11YDR228C COG6P53959 839 aa2.49□□□□□ -2.01
PCF11YDR228C BUD7Q08754 746 aa2.49□□□□□ -2.01
PCF11YDR228C YPL191CQ08930 360 aa2.49□□□□□ -2.01
PCF11YDR228C GSH1P32477 678 aa2.48□□□□□ -2.01
PCF11YDR228C GND1P38720 489 aaKnown RBP2.48□□□□□ -2.01
PCF11YDR228C FLO5P38894 1075 aa2.48□□□□□ -2.01
PCF11YDR228C YJL107CP42947 387 aa2.48□□□□□ -2.01
PCF11YDR228C POL31P46957 487 aa2.48□□□□□ -2.01
PCF11YDR228C MDV1P47025 714 aa2.48□□□□□ -2.01
PCF11YDR228C TRS31Q03337 283 aa2.48□□□□□ -2.01
PCF11YDR228C NEW1Q08972 1196 aaKnown RBP2.48□□□□□ -2.01
PCF11YDR228C PSF3Q12146 194 aa2.48□□□□□ -2.01
PCF11YDR228C GRX4P32642 244 aa2.48□□□□□ -2.01
PCF11YDR228C RPT3P33298 428 aaKnown RBP2.48□□□□□ -2.01
PCF11YDR228C VBA2P38358 474 aaKnown RBP2.48□□□□□ -2.01
PCF11YDR228C ACS1Q01574 713 aa2.48□□□□□ -2.01
PCF11YDR228C NDD1Q08887 554 aa2.48□□□□□ -2.01
PCF11YDR228C CNA1P23287 553 aa2.47□□□□□ -2.01
PCF11YDR228C GCS1P35197 352 aa2.47□□□□□ -2.01
PCF11YDR228C PAF1P38351 445 aa2.47□□□□□ -2.01
PCF11YDR228C YLF2P38746 405 aa2.47□□□□□ -2.01
PCF11YDR228C ARB1P40024 610 aaKnown RBP2.47□□□□□ -2.01
PCF11YDR228C YEN1P40028 759 aa2.47□□□□□ -2.01
PCF11YDR228C VFA1P40080 203 aa2.47□□□□□ -2.01
PCF11YDR228C YML053CQ04978 212 aa2.47□□□□□ -2.01
PCF11YDR228C PFA4Q12006 378 aa2.47□□□□□ -2.01
PCF11YDR228C UBX3Q12229 455 aa2.47□□□□□ -2.01
PCF11YDR228C TMA17Q12513 150 aa2.47□□□□□ -2.01
PCF11YDR228C YER175W-AQ8TGU4 54 aa2.47□□□□□ -2.01
PCF11YDR228C TGL1P34163 548 aa2.46□□□□□ -2.02
PCF11YDR228C YJR120WP47157 116 aa2.46□□□□□ -2.02
PCF11YDR228C EAF7P53911 425 aaKnown RBP2.46□□□□□ -2.02
PCF11YDR228C SNA4Q07549 140 aa2.46□□□□□ -2.02
PCF11YDR228C VAS1P07806 1104 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C YFL068WP0CX99 160 aa2.45□□□□□ -2.02
PCF11YDR228C YLL066W-AP0CY00 160 aa2.45□□□□□ -2.02
PCF11YDR228C YLL067W-AP0CY01 160 aa2.45□□□□□ -2.02
PCF11YDR228C SEC18P18759 758 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C ARN1P38731 627 aa2.45□□□□□ -2.02
PCF11YDR228C ERC1P38767 581 aa2.45□□□□□ -2.02
PCF11YDR228C CCT4P39078 528 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C TPA1P40032 644 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C CDC1P40986 491 aa2.45□□□□□ -2.02
PCF11YDR228C MAF1P41910 395 aa2.45□□□□□ -2.02
PCF11YDR228C CNM67P53865 581 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C BOP3P53958 396 aa2.45□□□□□ -2.02
PCF11YDR228C CRD1Q07560 283 aa2.45□□□□□ -2.02
PCF11YDR228C AIM6Q07716 390 aa2.45□□□□□ -2.02
PCF11YDR228C YBR255C-AQ3E776 120 aa2.45□□□□□ -2.02
PCF11YDR228C YCR043CP25361 127 aa2.45□□□□□ -2.02
PCF11YDR228C SCS2P40075 244 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C TES1P41903 349 aaKnown RBP2.45□□□□□ -2.02
PCF11YDR228C ORC5P50874 479 aa2.45□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 86.2 ms