RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 MT3P25713 68 aa5.81□□□□□ -1.48
VARS2-209ENST00000477288 UBR4Q5T4S7 5183 aa5.8□□□□□ -1.48
VARS2-209ENST00000477288 PRM1P04553 51 aa5.79□□□□□ -1.48
VARS2-209ENST00000477288 KRTAP19-6Q3LI70 58 aa5.76□□□□□ -1.49
VARS2-209ENST00000477288 MT1MQ8N339 61 aa5.75□□□□□ -1.49
VARS2-209ENST00000477288 FAT4Q6V0I7 4981 aa5.75□□□□□ -1.49
VARS2-209ENST00000477288 KRTAP9-2Q9BYQ4 174 aa5.75□□□□□ -1.49
VARS2-209ENST00000477288 LCE1DQ5T752 114 aa5.74□□□□□ -1.49
VARS2-209ENST00000477288 RNF213Q63HN8 5207 aa5.73□□□□□ -1.49
VARS2-209ENST00000477288 LOC100996750A0A140TA64 210 aa5.71□□□□□ -1.49
VARS2-209ENST00000477288 SYNE1Q8NF91 8797 aaKnown RBP5.71□□□□□ -1.5
VARS2-209ENST00000477288 LCE2AQ5TA79 106 aaPredicted RBP5.69□□□□□ -1.5
VARS2-209ENST00000477288 FSIP2Q5CZC0 6907 aa5.68□□□□□ -1.5
VARS2-209ENST00000477288 KRTAP4-3Q9BYR4 195 aa5.64□□□□□ -1.51
VARS2-209ENST00000477288 HMCN2Q8NDA2 5059 aa5.57□□□□□ -1.52
VARS2-209ENST00000477288 KRTAP9-6A0A140TA67 174 aa5.48□□□□□ -1.53
VARS2-209ENST00000477288 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
VARS2-209ENST00000477288 LCE5AQ5TCM9 118 aa5.45□□□□□ -1.54
VARS2-209ENST00000477288 MUC2Q02817 5179 aa5.42□□□□□ -1.54
VARS2-209ENST00000477288 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
VARS2-209ENST00000477288 KRTAP4-9Q9BYQ8 210 aa5.37□□□□□ -1.55
VARS2-209ENST00000477288 MT1AP04731 61 aa5.35□□□□□ -1.55
VARS2-209ENST00000477288 KRTAP2-3P0C7H8 128 aa5.23□□□□□ -1.57
VARS2-209ENST00000477288 KRTAP2-4Q9BYR9 128 aa5.23□□□□□ -1.57
VARS2-209ENST00000477288 KRTAP2-1Q9BYU5 128 aa5.23□□□□□ -1.57
VARS2-209ENST00000477288 KRTAP9-7A8MTY7 169 aa5.2□□□□□ -1.58
VARS2-209ENST00000477288 LCE1AQ5T7P2 110 aa5.1□□□□□ -1.59
VARS2-209ENST00000477288 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
VARS2-209ENST00000477288 LCE1CQ5T751 118 aa5.07□□□□□ -1.6
VARS2-209ENST00000477288 LCE1EQ5T753 118 aa5.07□□□□□ -1.6
VARS2-209ENST00000477288 LCE1FQ5T754 118 aa5.07□□□□□ -1.6
VARS2-209ENST00000477288 SYNE2Q8WXH0 6885 aaKnown RBP5.07□□□□□ -1.6
VARS2-209ENST00000477288 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
VARS2-209ENST00000477288 KRTAP6-3Q3LI67 103 aa5.05□□□□□ -1.6
VARS2-209ENST00000477288 KRTAP6-1Q3LI64 71 aa5.01□□□□□ -1.61
VARS2-209ENST00000477288 KRTAP9-6A8MVA2 160 aa4.97□□□□□ -1.61
VARS2-209ENST00000477288 KRTAP9-4Q9BYQ2 154 aa4.96□□□□□ -1.62
VARS2-209ENST00000477288 LCE4AQ5TA78 99 aa4.95□□□□□ -1.62
VARS2-209ENST00000477288 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.91□□□□□ -1.62
VARS2-209ENST00000477288 KRTAP2-2Q9BYT5 123 aa4.89□□□□□ -1.63
VARS2-209ENST00000477288 USH2AO75445 5202 aa4.87□□□□□ -1.63
VARS2-209ENST00000477288 FCGBPQ9Y6R7 5405 aaPredicted RBP4.84□□□□□ -1.63
VARS2-209ENST00000477288 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
VARS2-209ENST00000477288 KMT2DO14686 5537 aa4.56□□□□□ -1.68
VARS2-209ENST00000477288 KRTAP9-9Q9BYP9 154 aa4.53□□□□□ -1.68
VARS2-209ENST00000477288 MACF1Q9UPN3 7388 aaKnown RBP4.49□□□□□ -1.69
VARS2-209ENST00000477288 KRTAP5-9P26371 169 aa4.42□□□□□ -1.7
VARS2-209ENST00000477288 SSPOA2VEC9 5147 aa4.4□□□□□ -1.71
VARS2-209ENST00000477288 MUC12Q9UKN1 5478 aa4.37□□□□□ -1.71
VARS2-209ENST00000477288 NEBP20929 6669 aa4.3□□□□□ -1.72
VARS2-209ENST00000477288 KRTAP4-11Q9BYQ6 195 aa4.29□□□□□ -1.72
VARS2-209ENST00000477288 MDN1Q9NU22 5596 aa4.26□□□□□ -1.73
VARS2-209ENST00000477288 KRTAP4-6Q9BYQ5 205 aa4.16□□□□□ -1.74
VARS2-209ENST00000477288 KRTAP20-2Q3LI61 65 aa4.13□□□□□ -1.75
VARS2-209ENST00000477288 MUC19Q7Z5P9 8384 aa4.06□□□□□ -1.76
VARS2-209ENST00000477288 KRTAP4-4Q9BYR3 166 aa4.03□□□□□ -1.76
VARS2-209ENST00000477288 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
VARS2-209ENST00000477288 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
VARS2-209ENST00000477288 GPR98Q8WXG9 6306 aa3.85□□□□□ -1.79
VARS2-209ENST00000477288 KRTAP5-4Q6L8H1 288 aa3.78□□□□□ -1.81
VARS2-209ENST00000477288 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
VARS2-209ENST00000477288 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
VARS2-209ENST00000477288 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
VARS2-209ENST00000477288 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.87
VARS2-209ENST00000477288 AHNAK2Q8IVF2 5795 aa3.27□□□□□ -1.89
VARS2-209ENST00000477288 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.92
VARS2-209ENST00000477288 KRTAP5-8O75690 187 aa3.06□□□□□ -1.92
VARS2-209ENST00000477288 PHGR1C9JFL3 82 aa3□□□□□ -1.93
VARS2-209ENST00000477288 KRTAP5-10Q6L8G5 202 aa2.97□□□□□ -1.93
VARS2-209ENST00000477288 MUC5BQ9HC84 5762 aaPredicted RBP2.79□□□□□ -1.96
VARS2-209ENST00000477288 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
VARS2-209ENST00000477288 KRTAP5-11Q6L8G4 156 aa2.72□□□□□ -1.97
VARS2-209ENST00000477288 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
VARS2-209ENST00000477288 KRTAP21-2Q3LI59 83 aa2.59□□□□□ -2
VARS2-209ENST00000477288 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
VARS2-209ENST00000477288 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.46□□□□□ -2.02
VARS2-209ENST00000477288 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
VARS2-209ENST00000477288 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 21.8 ms