RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 KRTAP19-6Q3LI70 58 aa2.62□□□□□ -1.99
BRCA1-205ENST00000461221 MT1AP04731 61 aa2.62□□□□□ -1.99
BRCA1-205ENST00000461221 MUC2Q02817 5179 aa2.61□□□□□ -1.99
BRCA1-205ENST00000461221 LCE5AQ5TCM9 118 aa2.59□□□□□ -1.99
BRCA1-205ENST00000461221 HERC2O95714 4834 aa2.58□□□□□ -2
BRCA1-205ENST00000461221 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
BRCA1-205ENST00000461221 LRP2P98164 4655 aa2.56□□□□□ -2
BRCA1-205ENST00000461221 BIRC6Q9NR09 4857 aa2.54□□□□□ -2
BRCA1-205ENST00000461221 KRTAP2-3P0C7H8 128 aa2.53□□□□□ -2
BRCA1-205ENST00000461221 KRTAP2-4Q9BYR9 128 aa2.53□□□□□ -2
BRCA1-205ENST00000461221 KRTAP2-1Q9BYU5 128 aa2.53□□□□□ -2
BRCA1-205ENST00000461221 KRTAP19-2Q3LHN2 52 aa2.51□□□□□ -2.01
BRCA1-205ENST00000461221 KRTAP9-2Q9BYQ4 174 aa2.5□□□□□ -2.01
BRCA1-205ENST00000461221 KRTAP4-9Q9BYQ8 210 aa2.47□□□□□ -2.01
BRCA1-205ENST00000461221 KRTAP20-1Q3LI63 56 aa2.46□□□□□ -2.01
BRCA1-205ENST00000461221 KRTAP19-7Q3SYF9 63 aa2.46□□□□□ -2.02
BRCA1-205ENST00000461221 KRTAP6-2Q3LI66 62 aa2.43□□□□□ -2.02
BRCA1-205ENST00000461221 UBR4Q5T4S7 5183 aa2.42□□□□□ -2.02
BRCA1-205ENST00000461221 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
BRCA1-205ENST00000461221 LCE1EQ5T753 118 aa2.41□□□□□ -2.02
BRCA1-205ENST00000461221 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
BRCA1-205ENST00000461221 LCE1AQ5T7P2 110 aa2.41□□□□□ -2.02
BRCA1-205ENST00000461221 KRTAP9-6A0A140TA67 174 aa2.39□□□□□ -2.03
BRCA1-205ENST00000461221 KRTAP9-4Q9BYQ2 154 aa2.39□□□□□ -2.03
BRCA1-205ENST00000461221 KIAA1109Q2LD37 5005 aa2.39□□□□□ -2.03
BRCA1-205ENST00000461221 LCE4AQ5TA78 99 aa2.39□□□□□ -2.03
BRCA1-205ENST00000461221 FAT4Q6V0I7 4981 aa2.38□□□□□ -2.03
BRCA1-205ENST00000461221 KRTAP6-1Q3LI64 71 aa2.35□□□□□ -2.03
BRCA1-205ENST00000461221 KRTAP6-3Q3LI67 103 aa2.33□□□□□ -2.04
BRCA1-205ENST00000461221 RNF213Q63HN8 5207 aa2.32□□□□□ -2.04
BRCA1-205ENST00000461221 SYNE1Q8NF91 8797 aaKnown RBP2.3□□□□□ -2.04
BRCA1-205ENST00000461221 HMCN2Q8NDA2 5059 aa2.3□□□□□ -2.04
BRCA1-205ENST00000461221 KRTAP9-7A8MTY7 169 aa2.28□□□□□ -2.04
BRCA1-205ENST00000461221 LCE2AQ5TA79 106 aaPredicted RBP2.28□□□□□ -2.04
BRCA1-205ENST00000461221 KRTAP2-2Q9BYT5 123 aa2.26□□□□□ -2.05
BRCA1-205ENST00000461221 KRTAP9-6A8MVA2 160 aa2.21□□□□□ -2.06
BRCA1-205ENST00000461221 OBSCNQ5VST9 7968 aa2.18□□□□□ -2.06
BRCA1-205ENST00000461221 SYNE2Q8WXH0 6885 aaKnown RBP2.16□□□□□ -2.06
BRCA1-205ENST00000461221 KRTAP9-9Q9BYP9 154 aa2.15□□□□□ -2.06
BRCA1-205ENST00000461221 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-205ENST00000461221 KMT2DO14686 5537 aa2.07□□□□□ -2.08
BRCA1-205ENST00000461221 USH2AO75445 5202 aa2.07□□□□□ -2.08
BRCA1-205ENST00000461221 FSIP2Q5CZC0 6907 aa2.06□□□□□ -2.08
BRCA1-205ENST00000461221 KRTAP4-11Q9BYQ6 195 aa2.04□□□□□ -2.08
BRCA1-205ENST00000461221 KRTAP20-2Q3LI61 65 aa1.93□□□□□ -2.1
BRCA1-205ENST00000461221 SSPOA2VEC9 5147 aa1.91□□□□□ -2.1
BRCA1-205ENST00000461221 MUC12Q9UKN1 5478 aa1.84□□□□□ -2.11
BRCA1-205ENST00000461221 KRTAP4-6Q9BYQ5 205 aa1.83□□□□□ -2.12
BRCA1-205ENST00000461221 KRTAP5-9P26371 169 aa1.82□□□□□ -2.12
BRCA1-205ENST00000461221 KRTAP4-4Q9BYR3 166 aa1.82□□□□□ -2.12
BRCA1-205ENST00000461221 NEBP20929 6669 aa1.79□□□□□ -2.12
BRCA1-205ENST00000461221 KRTAP4-12Q9BQ66 201 aa1.77□□□□□ -2.13
BRCA1-205ENST00000461221 KRTAP4-2Q9BYR5 136 aa1.77□□□□□ -2.13
BRCA1-205ENST00000461221 FCGBPQ9Y6R7 5405 aaPredicted RBP1.77□□□□□ -2.13
BRCA1-205ENST00000461221 KRTAP5-4Q6L8H1 288 aa1.75□□□□□ -2.13
BRCA1-205ENST00000461221 MUC19Q7Z5P9 8384 aa1.74□□□□□ -2.13
BRCA1-205ENST00000461221 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
BRCA1-205ENST00000461221 MACF1Q9UPN3 7388 aaKnown RBP1.71□□□□□ -2.14
BRCA1-205ENST00000461221 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
BRCA1-205ENST00000461221 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
BRCA1-205ENST00000461221 MDN1Q9NU22 5596 aa1.61□□□□□ -2.15
BRCA1-205ENST00000461221 KRTAP5-3Q6L8H2 238 aa1.52□□□□□ -2.17
BRCA1-205ENST00000461221 MUC5ACP98088 5654 aa1.42□□□□□ -2.18
BRCA1-205ENST00000461221 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
BRCA1-205ENST00000461221 PHGR1C9JFL3 82 aa1.37□□□□□ -2.19
BRCA1-205ENST00000461221 KRTAP5-10Q6L8G5 202 aa1.35□□□□□ -2.19
BRCA1-205ENST00000461221 KRTAP5-8O75690 187 aa1.32□□□□□ -2.2
BRCA1-205ENST00000461221 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.2
BRCA1-205ENST00000461221 HMCN1Q96RW7 5635 aa1.26□□□□□ -2.21
BRCA1-205ENST00000461221 MUC5BQ9HC84 5762 aaPredicted RBP1.26□□□□□ -2.21
BRCA1-205ENST00000461221 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.22□□□□□ -2.21
BRCA1-205ENST00000461221 KRTAP5-11Q6L8G4 156 aa1.21□□□□□ -2.22
BRCA1-205ENST00000461221 KRTAP5-1Q6L8H4 278 aa1.19□□□□□ -2.22
BRCA1-205ENST00000461221 KRTAP5-7Q6L8G8 165 aa1.12□□□□□ -2.23
BRCA1-205ENST00000461221 AHNAKQ09666 5890 aaKnown RBP1.11□□□□□ -2.23
BRCA1-205ENST00000461221 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
BRCA1-205ENST00000461221 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
BRCA1-205ENST00000461221 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 99.8 ms