RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 DCAF8L2P0C7V8 631 aa15.02■□□□□ -0
BRCA1-205ENST00000461221 PELP1Q8IZL8 1130 aaKnown RBP14.69□□□□□ -0.06
BRCA1-205ENST00000461221 SUPT5HO00267 1087 aaKnown RBP14.26□□□□□ -0.13
BRCA1-205ENST00000461221 APLP2Q06481 763 aa14.07□□□□□ -0.16
BRCA1-205ENST00000461221 ERICH6Q7L0X2 663 aa14.05□□□□□ -0.16
BRCA1-205ENST00000461221 CCER1Q8TC90 406 aaPredicted RBP14.02□□□□□ -0.17
BRCA1-205ENST00000461221 FAM9AQ8IZU1 332 aaPredicted RBP13.95□□□□□ -0.18
BRCA1-205ENST00000461221 EHMT2Q96KQ7 1210 aa13.95□□□□□ -0.18
BRCA1-205ENST00000461221 CENPBP07199 599 aaPredicted RBP13.83□□□□□ -0.2
BRCA1-205ENST00000461221 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
BRCA1-205ENST00000461221 MYT1Q01538 1121 aa13.74□□□□□ -0.21
BRCA1-205ENST00000461221 ZEB1P37275 1124 aaPredicted RBP13.65□□□□□ -0.22
BRCA1-205ENST00000461221 NEFLP07196 543 aa13.62□□□□□ -0.23
BRCA1-205ENST00000461221 PCGF6Q9BYE7 350 aa13.57□□□□□ -0.24
BRCA1-205ENST00000461221 TTBK1Q5TCY1 1321 aaPredicted RBP13.55□□□□□ -0.24
BRCA1-205ENST00000461221 NISCHQ9Y2I1 1504 aa13.43□□□□□ -0.26
BRCA1-205ENST00000461221 ATP1B4Q9UN42 357 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-205ENST00000461221 DAXXQ9UER7 740 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-205ENST00000461221 RANGAP1P46060 587 aaPredicted RBP13.35□□□□□ -0.27
BRCA1-205ENST00000461221 YTHDC1Q96MU7 727 aaKnown RBP13.32□□□□□ -0.28
BRCA1-205ENST00000461221 TRIM41Q8WV44 630 aa13.25□□□□□ -0.29
BRCA1-205ENST00000461221 UBTFP17480 764 aaKnown RBP13.22□□□□□ -0.29
BRCA1-205ENST00000461221 RTL5Q5HYW3 569 aaPredicted RBP13.04□□□□□ -0.32
BRCA1-205ENST00000461221 ZNF316A6NFI3 1004 aaPredicted RBP13.02□□□□□ -0.33
BRCA1-205ENST00000461221 POLR3GLQ9BT43 218 aa13.01□□□□□ -0.33
BRCA1-205ENST00000461221 MYT1LQ9UL68 1186 aa13□□□□□ -0.33
BRCA1-205ENST00000461221 TRIM26Q12899 539 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-205ENST00000461221 CLSPNQ9HAW4 1339 aa12.93□□□□□ -0.34
BRCA1-205ENST00000461221 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
BRCA1-205ENST00000461221 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
BRCA1-205ENST00000461221 HRCP23327 699 aa12.84□□□□□ -0.35
BRCA1-205ENST00000461221 ITGAEP38570 1179 aa12.84□□□□□ -0.35
BRCA1-205ENST00000461221 PPARGC1BQ86YN6 1023 aaKnown RBP12.84□□□□□ -0.35
BRCA1-205ENST00000461221 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
BRCA1-205ENST00000461221 CNGB1Q14028 1251 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-205ENST00000461221 ZBTB47Q9UFB7 747 aaPredicted RBP12.73□□□□□ -0.37
BRCA1-205ENST00000461221 CHIC1Q5VXU3 224 aa12.68□□□□□ -0.38
BRCA1-205ENST00000461221 DIEXFQ68CQ4 756 aaKnown RBP12.62□□□□□ -0.39
BRCA1-205ENST00000461221 CDK11AQ9UQ88 783 aaPredicted RBP12.62□□□□□ -0.39
BRCA1-205ENST00000461221 TRIM52Q96A61 297 aa12.53□□□□□ -0.4
BRCA1-205ENST00000461221 CANXP27824 592 aaKnown RBP12.53□□□□□ -0.4
BRCA1-205ENST00000461221 ANP32CO43423 234 aa12.52□□□□□ -0.41
BRCA1-205ENST00000461221 FAM50AQ14320 339 aaKnown RBP12.51□□□□□ -0.41
BRCA1-205ENST00000461221 NEFMP07197 916 aa12.5□□□□□ -0.41
BRCA1-205ENST00000461221 BCANQ96GW7 911 aa12.49□□□□□ -0.41
BRCA1-205ENST00000461221 ANP32BQ92688 251 aaKnown RBP12.47□□□□□ -0.41
BRCA1-205ENST00000461221 ANP32AP39687 249 aaKnown RBP12.46□□□□□ -0.41
BRCA1-205ENST00000461221 SLC24A1O60721 1099 aa12.44□□□□□ -0.42
BRCA1-205ENST00000461221 NEUROD1Q13562 356 aa12.43□□□□□ -0.42
BRCA1-205ENST00000461221 LOC105371045A0A1W2PR82 267 aa12.42□□□□□ -0.42
BRCA1-205ENST00000461221 GTF3C3Q9Y5Q9 886 aa12.4□□□□□ -0.42
BRCA1-205ENST00000461221 ZNF326Q5BKZ1 582 aaKnown RBP12.39□□□□□ -0.43
BRCA1-205ENST00000461221 GLIPR1L2Q4G1C9 344 aa12.39□□□□□ -0.43
BRCA1-205ENST00000461221 BCL11AQ9H165 835 aa12.37□□□□□ -0.43
BRCA1-205ENST00000461221 EIF5BO60841 1220 aaKnown RBP12.33□□□□□ -0.44
BRCA1-205ENST00000461221 HSP90AA1P07900 732 aaKnown RBP12.32□□□□□ -0.44
BRCA1-205ENST00000461221 UPF2Q9HAU5 1272 aaKnown RBP12.29□□□□□ -0.44
BRCA1-205ENST00000461221 NPM2Q86SE8 214 aaKnown RBP12.29□□□□□ -0.44
BRCA1-205ENST00000461221 CDK11BP21127 795 aaKnown RBP12.18□□□□□ -0.46
BRCA1-205ENST00000461221 ACIN1Q9UKV3 1341 aaKnown RBP12.17□□□□□ -0.46
BRCA1-205ENST00000461221 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.12□□□□□ -0.47
BRCA1-205ENST00000461221 ESF1Q9H501 851 aaKnown RBP12.11□□□□□ -0.47
BRCA1-205ENST00000461221 FKBP8Q14318 412 aa12.09□□□□□ -0.47
BRCA1-205ENST00000461221 FBLN2P98095 1184 aa12.09□□□□□ -0.47
BRCA1-205ENST00000461221 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
BRCA1-205ENST00000461221 HNRNPUQ00839 825 aaKnown RBP eCLIP12.03□□□□□ -0.48
BRCA1-205ENST00000461221 TONSLQ96HA7 1378 aa12.03□□□□□ -0.48
BRCA1-205ENST00000461221 CCDC136Q96JN2 1154 aa12.03□□□□□ -0.48
BRCA1-205ENST00000461221 ZNF777Q9ULD5 760 aaPredicted RBP12.02□□□□□ -0.48
BRCA1-205ENST00000461221 MYH16Q9H6N6 1097 aa12.01□□□□□ -0.49
BRCA1-205ENST00000461221 ANP32EQ9BTT0 268 aa12.01□□□□□ -0.49
BRCA1-205ENST00000461221 NCLP19338 710 aaKnown RBP12□□□□□ -0.49
BRCA1-205ENST00000461221 TNNT2P45379 298 aaPredicted RBP12□□□□□ -0.49
BRCA1-205ENST00000461221 NBR1Q14596 966 aa12□□□□□ -0.49
BRCA1-205ENST00000461221 CHGAP10645 457 aaKnown RBP11.99□□□□□ -0.49
BRCA1-205ENST00000461221 ARXQ96QS3 562 aa11.98□□□□□ -0.49
BRCA1-205ENST00000461221 WDR43Q15061 677 aaKnown RBP eCLIP11.98□□□□□ -0.49
BRCA1-205ENST00000461221 FAM9BQ8IZU0 186 aa11.98□□□□□ -0.49
BRCA1-205ENST00000461221 TRIM44Q96DX7 344 aaPredicted RBP11.97□□□□□ -0.49
BRCA1-205ENST00000461221 BECN1Q14457 450 aa11.96□□□□□ -0.49
BRCA1-205ENST00000461221 DDRGK1Q96HY6 314 aa11.96□□□□□ -0.49
BRCA1-205ENST00000461221 TMC1Q8TDI8 760 aa11.96□□□□□ -0.5
BRCA1-205ENST00000461221 GOLGA6L22H0YM25 854 aa11.95□□□□□ -0.5
BRCA1-205ENST00000461221 ARID3CA6NKF2 412 aa11.94□□□□□ -0.5
BRCA1-205ENST00000461221 P3H3Q8IVL6 736 aa11.94□□□□□ -0.5
BRCA1-205ENST00000461221 SALL2Q9Y467 1007 aaPredicted RBP11.91□□□□□ -0.5
BRCA1-205ENST00000461221 ZRSR1Q15695 479 aaKnown RBP11.91□□□□□ -0.5
BRCA1-205ENST00000461221 DDX10Q13206 875 aaKnown RBP11.88□□□□□ -0.51
BRCA1-205ENST00000461221 CSRNP3Q8WYN3 585 aa11.87□□□□□ -0.51
BRCA1-205ENST00000461221 PTMAP06454 111 aaKnown RBP11.87□□□□□ -0.51
BRCA1-205ENST00000461221 PABPN1Q86U42 306 aaKnown RBP eCLIP11.87□□□□□ -0.51
BRCA1-205ENST00000461221 NPM1P06748 294 aaKnown RBP eCLIP11.86□□□□□ -0.51
BRCA1-205ENST00000461221 MRS2Q9HD23 443 aa11.85□□□□□ -0.51
BRCA1-205ENST00000461221 CASC1Q6TDU7 716 aa11.83□□□□□ -0.52
BRCA1-205ENST00000461221 DNTTIP2Q5QJE6 756 aaKnown RBP11.82□□□□□ -0.52
BRCA1-205ENST00000461221 SCAF1Q9H7N4 1312 aaKnown RBP11.82□□□□□ -0.52
BRCA1-205ENST00000461221 PLPPR3Q6T4P5 718 aa11.82□□□□□ -0.52
BRCA1-205ENST00000461221 ERICH6BQ5W0A0 696 aa11.8□□□□□ -0.52
BRCA1-205ENST00000461221 A0A0G2JS52 829 aa11.8□□□□□ -0.52
BRCA1-205ENST00000461221 GOLGA6L6A8MZA4 724 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms