RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 FLGP20930 4061 aaPredicted RBP2.42□□□□□ -2.02
NEDD9-204ENST00000448183 KRTAP9-2Q9BYQ4 174 aa2.41□□□□□ -2.02
NEDD9-204ENST00000448183 MT1MQ8N339 61 aa2.4□□□□□ -2.03
NEDD9-204ENST00000448183 PRM1P04553 51 aa2.39□□□□□ -2.03
NEDD9-204ENST00000448183 MT3P25713 68 aa2.39□□□□□ -2.03
NEDD9-204ENST00000448183 HMCN2Q8NDA2 5059 aa2.36□□□□□ -2.03
NEDD9-204ENST00000448183 LOC100996750A0A140TA64 210 aa2.34□□□□□ -2.04
NEDD9-204ENST00000448183 LPAP08519 4548 aa2.33□□□□□ -2.04
NEDD9-204ENST00000448183 KRTAP4-3Q9BYR4 195 aa2.31□□□□□ -2.04
NEDD9-204ENST00000448183 KRTAP19-7Q3SYF9 63 aa2.29□□□□□ -2.04
NEDD9-204ENST00000448183 UBR4Q5T4S7 5183 aa2.29□□□□□ -2.04
NEDD9-204ENST00000448183 KRTAP2-3P0C7H8 128 aa2.27□□□□□ -2.05
NEDD9-204ENST00000448183 KRTAP2-4Q9BYR9 128 aa2.27□□□□□ -2.05
NEDD9-204ENST00000448183 KRTAP2-1Q9BYU5 128 aa2.27□□□□□ -2.05
NEDD9-204ENST00000448183 MT1AP04731 61 aa2.26□□□□□ -2.05
NEDD9-204ENST00000448183 MT4P47944 62 aa2.26□□□□□ -2.05
NEDD9-204ENST00000448183 LCE1BQ5T7P3 118 aa2.25□□□□□ -2.05
NEDD9-204ENST00000448183 OBSCNQ5VST9 7968 aa2.25□□□□□ -2.05
NEDD9-204ENST00000448183 KRTAP9-7A8MTY7 169 aa2.25□□□□□ -2.05
NEDD9-204ENST00000448183 LCE1DQ5T752 114 aa2.24□□□□□ -2.05
NEDD9-204ENST00000448183 LCE1AQ5T7P2 110 aa2.22□□□□□ -2.05
NEDD9-204ENST00000448183 RNF213Q63HN8 5207 aa2.22□□□□□ -2.05
NEDD9-204ENST00000448183 KRTAP6-3Q3LI67 103 aa2.21□□□□□ -2.06
NEDD9-204ENST00000448183 KRTAP4-9Q9BYQ8 210 aa2.21□□□□□ -2.06
NEDD9-204ENST00000448183 KRTAP20-1Q3LI63 56 aa2.21□□□□□ -2.06
NEDD9-204ENST00000448183 FSIP2Q5CZC0 6907 aa2.16□□□□□ -2.06
NEDD9-204ENST00000448183 FAT4Q6V0I7 4981 aa2.16□□□□□ -2.06
NEDD9-204ENST00000448183 MUC2Q02817 5179 aa2.15□□□□□ -2.07
NEDD9-204ENST00000448183 KRTAP9-6A8MVA2 160 aa2.14□□□□□ -2.07
NEDD9-204ENST00000448183 KRTAP6-2Q3LI66 62 aa2.1□□□□□ -2.07
NEDD9-204ENST00000448183 SYNE2Q8WXH0 6885 aaKnown RBP2.1□□□□□ -2.07
NEDD9-204ENST00000448183 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
NEDD9-204ENST00000448183 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.08□□□□□ -2.08
NEDD9-204ENST00000448183 LCE5AQ5TCM9 118 aa2.08□□□□□ -2.08
NEDD9-204ENST00000448183 LCE4AQ5TA78 99 aa2.07□□□□□ -2.08
NEDD9-204ENST00000448183 KRTAP9-4Q9BYQ2 154 aa2.05□□□□□ -2.08
NEDD9-204ENST00000448183 MACF1Q9UPN3 7388 aaKnown RBP2.04□□□□□ -2.08
NEDD9-204ENST00000448183 KRTAP4-6Q9BYQ5 205 aa2.04□□□□□ -2.08
NEDD9-204ENST00000448183 GPR98Q8WXG9 6306 aa2.04□□□□□ -2.08
NEDD9-204ENST00000448183 KRTAP2-2Q9BYT5 123 aa2.01□□□□□ -2.09
NEDD9-204ENST00000448183 FCGBPQ9Y6R7 5405 aaPredicted RBP2□□□□□ -2.09
NEDD9-204ENST00000448183 KRTAP5-9P26371 169 aa1.96□□□□□ -2.1
NEDD9-204ENST00000448183 DSTQ03001 7570 aaKnown RBP1.96□□□□□ -2.1
NEDD9-204ENST00000448183 USH2AO75445 5202 aa1.96□□□□□ -2.1
NEDD9-204ENST00000448183 KRTAP4-12Q9BQ66 201 aa1.95□□□□□ -2.1
NEDD9-204ENST00000448183 KMT2DO14686 5537 aa1.91□□□□□ -2.1
NEDD9-204ENST00000448183 LCE1CQ5T751 118 aa1.89□□□□□ -2.11
NEDD9-204ENST00000448183 LCE1EQ5T753 118 aa1.89□□□□□ -2.11
NEDD9-204ENST00000448183 LCE1FQ5T754 118 aa1.89□□□□□ -2.11
NEDD9-204ENST00000448183 MUC19Q7Z5P9 8384 aa1.87□□□□□ -2.11
NEDD9-204ENST00000448183 SSPOA2VEC9 5147 aa1.85□□□□□ -2.11
NEDD9-204ENST00000448183 NEBP20929 6669 aa1.81□□□□□ -2.12
NEDD9-204ENST00000448183 KRTAP9-9Q9BYP9 154 aa1.78□□□□□ -2.12
NEDD9-204ENST00000448183 KRTAP4-11Q9BYQ6 195 aa1.75□□□□□ -2.13
NEDD9-204ENST00000448183 MDN1Q9NU22 5596 aa1.7□□□□□ -2.14
NEDD9-204ENST00000448183 KRTAP5-4Q6L8H1 288 aa1.69□□□□□ -2.14
NEDD9-204ENST00000448183 MUC12Q9UKN1 5478 aa1.68□□□□□ -2.14
NEDD9-204ENST00000448183 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
NEDD9-204ENST00000448183 KRTAP20-2Q3LI61 65 aa1.67□□□□□ -2.14
NEDD9-204ENST00000448183 KRTAP4-2Q9BYR5 136 aa1.59□□□□□ -2.15
NEDD9-204ENST00000448183 KRTAP4-4Q9BYR3 166 aa1.56□□□□□ -2.16
NEDD9-204ENST00000448183 AHNAK2Q8IVF2 5795 aa1.47□□□□□ -2.17
NEDD9-204ENST00000448183 KRTAP5-3Q6L8H2 238 aa1.46□□□□□ -2.18
NEDD9-204ENST00000448183 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
NEDD9-204ENST00000448183 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
NEDD9-204ENST00000448183 KRTAP5-2Q701N4 177 aa1.39□□□□□ -2.19
NEDD9-204ENST00000448183 KRTAP5-7Q6L8G8 165 aa1.32□□□□□ -2.2
NEDD9-204ENST00000448183 KRTAP5-8O75690 187 aa1.29□□□□□ -2.2
NEDD9-204ENST00000448183 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
NEDD9-204ENST00000448183 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
NEDD9-204ENST00000448183 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
NEDD9-204ENST00000448183 KRTAP5-11Q6L8G4 156 aa1.2□□□□□ -2.22
NEDD9-204ENST00000448183 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.16□□□□□ -2.22
NEDD9-204ENST00000448183 MUC5BQ9HC84 5762 aaPredicted RBP1.16□□□□□ -2.22
NEDD9-204ENST00000448183 KRTAP5-1Q6L8H4 278 aa1.15□□□□□ -2.23
NEDD9-204ENST00000448183 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
NEDD9-204ENST00000448183 KRTAP21-1Q3LI58 79 aa1.07□□□□□ -2.24
NEDD9-204ENST00000448183 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms