RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 KRTAP9-2Q9BYQ4 174 aa5.3□□□□□ -1.56
PTPRF-209ENST00000438120 ABCA13Q86UQ4 5058 aa5.3□□□□□ -1.56
PTPRF-209ENST00000438120 MUC17Q685J3 4493 aa5.29□□□□□ -1.56
PTPRF-209ENST00000438120 MT3P25713 68 aa5.26□□□□□ -1.57
PTPRF-209ENST00000438120 KRTAP19-6Q3LI70 58 aa5.25□□□□□ -1.57
PTPRF-209ENST00000438120 PRM1P04553 51 aa5.22□□□□□ -1.57
PTPRF-209ENST00000438120 LCE1BQ5T7P3 118 aa5.22□□□□□ -1.57
PTPRF-209ENST00000438120 LCE1DQ5T752 114 aa5.18□□□□□ -1.58
PTPRF-209ENST00000438120 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
PTPRF-209ENST00000438120 FAT4Q6V0I7 4981 aa5.09□□□□□ -1.59
PTPRF-209ENST00000438120 UBR4Q5T4S7 5183 aa5.09□□□□□ -1.59
PTPRF-209ENST00000438120 KRTAP4-9Q9BYQ8 210 aa5.06□□□□□ -1.6
PTPRF-209ENST00000438120 RNF213Q63HN8 5207 aa5.05□□□□□ -1.6
PTPRF-209ENST00000438120 KRTAP19-7Q3SYF9 63 aa5.05□□□□□ -1.6
PTPRF-209ENST00000438120 SYNE2Q8WXH0 6885 aaKnown RBP5.04□□□□□ -1.6
PTPRF-209ENST00000438120 HMCN2Q8NDA2 5059 aa5.01□□□□□ -1.61
PTPRF-209ENST00000438120 LCE2AQ5TA79 106 aaPredicted RBP5□□□□□ -1.61
PTPRF-209ENST00000438120 MUC2Q02817 5179 aa4.99□□□□□ -1.61
PTPRF-209ENST00000438120 KRTAP9-6A0A140TA67 174 aa4.97□□□□□ -1.61
PTPRF-209ENST00000438120 MT1AP04731 61 aa4.94□□□□□ -1.62
PTPRF-209ENST00000438120 KRTAP2-3P0C7H8 128 aa4.89□□□□□ -1.63
PTPRF-209ENST00000438120 KRTAP2-4Q9BYR9 128 aa4.89□□□□□ -1.63
PTPRF-209ENST00000438120 KRTAP2-1Q9BYU5 128 aa4.89□□□□□ -1.63
PTPRF-209ENST00000438120 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
PTPRF-209ENST00000438120 KRTAP20-1Q3LI63 56 aa4.79□□□□□ -1.64
PTPRF-209ENST00000438120 OBSCNQ5VST9 7968 aa4.75□□□□□ -1.65
PTPRF-209ENST00000438120 KRTAP9-7A8MTY7 169 aa4.73□□□□□ -1.65
PTPRF-209ENST00000438120 KRTAP6-1Q3LI64 71 aa4.73□□□□□ -1.65
PTPRF-209ENST00000438120 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.66
PTPRF-209ENST00000438120 KRTAP9-6A8MVA2 160 aa4.66□□□□□ -1.66
PTPRF-209ENST00000438120 KRTAP6-3Q3LI67 103 aa4.61□□□□□ -1.67
PTPRF-209ENST00000438120 LCE1AQ5T7P2 110 aa4.59□□□□□ -1.67
PTPRF-209ENST00000438120 KRTAP9-4Q9BYQ2 154 aa4.58□□□□□ -1.68
PTPRF-209ENST00000438120 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.55□□□□□ -1.68
PTPRF-209ENST00000438120 LCE1CQ5T751 118 aa4.45□□□□□ -1.7
PTPRF-209ENST00000438120 LCE1EQ5T753 118 aa4.45□□□□□ -1.7
PTPRF-209ENST00000438120 LCE1FQ5T754 118 aa4.45□□□□□ -1.7
PTPRF-209ENST00000438120 LCE4AQ5TA78 99 aa4.45□□□□□ -1.7
PTPRF-209ENST00000438120 FCGBPQ9Y6R7 5405 aaPredicted RBP4.42□□□□□ -1.7
PTPRF-209ENST00000438120 USH2AO75445 5202 aa4.42□□□□□ -1.7
PTPRF-209ENST00000438120 KRTAP2-2Q9BYT5 123 aa4.41□□□□□ -1.7
PTPRF-209ENST00000438120 DSTQ03001 7570 aaKnown RBP4.35□□□□□ -1.71
PTPRF-209ENST00000438120 KMT2DO14686 5537 aa4.25□□□□□ -1.73
PTPRF-209ENST00000438120 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
PTPRF-209ENST00000438120 NEBP20929 6669 aa4□□□□□ -1.77
PTPRF-209ENST00000438120 KRTAP9-9Q9BYP9 154 aa4□□□□□ -1.77
PTPRF-209ENST00000438120 SSPOA2VEC9 5147 aa3.96□□□□□ -1.78
PTPRF-209ENST00000438120 KRTAP4-6Q9BYQ5 205 aa3.96□□□□□ -1.78
PTPRF-209ENST00000438120 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.78
PTPRF-209ENST00000438120 MUC12Q9UKN1 5478 aa3.86□□□□□ -1.79
PTPRF-209ENST00000438120 KRTAP5-9P26371 169 aa3.84□□□□□ -1.8
PTPRF-209ENST00000438120 KRTAP20-2Q3LI61 65 aa3.79□□□□□ -1.8
PTPRF-209ENST00000438120 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
PTPRF-209ENST00000438120 MDN1Q9NU22 5596 aa3.74□□□□□ -1.81
PTPRF-209ENST00000438120 KRTAP4-4Q9BYR3 166 aa3.72□□□□□ -1.81
PTPRF-209ENST00000438120 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
PTPRF-209ENST00000438120 KRTAP4-2Q9BYR5 136 aa3.66□□□□□ -1.82
PTPRF-209ENST00000438120 KRTAP5-5Q701N2 237 aaPredicted RBP3.45□□□□□ -1.86
PTPRF-209ENST00000438120 KRTAP5-4Q6L8H1 288 aa3.43□□□□□ -1.86
PTPRF-209ENST00000438120 GPR98Q8WXG9 6306 aa3.43□□□□□ -1.86
PTPRF-209ENST00000438120 MUC5ACP98088 5654 aa3.21□□□□□ -1.9
PTPRF-209ENST00000438120 KRTAP5-3Q6L8H2 238 aa3.05□□□□□ -1.92
PTPRF-209ENST00000438120 HMCN1Q96RW7 5635 aa3□□□□□ -1.93
PTPRF-209ENST00000438120 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
PTPRF-209ENST00000438120 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.96
PTPRF-209ENST00000438120 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.97
PTPRF-209ENST00000438120 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
PTPRF-209ENST00000438120 KRTAP5-2Q701N4 177 aa2.57□□□□□ -2
PTPRF-209ENST00000438120 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
PTPRF-209ENST00000438120 AHNAKQ09666 5890 aaKnown RBP2.46□□□□□ -2.01
PTPRF-209ENST00000438120 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
PTPRF-209ENST00000438120 KRTAP5-11Q6L8G4 156 aa2.37□□□□□ -2.03
PTPRF-209ENST00000438120 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
PTPRF-209ENST00000438120 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
PTPRF-209ENST00000438120 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
PTPRF-209ENST00000438120 KRTAP5-7Q6L8G8 165 aa1.86□□□□□ -2.11
PTPRF-209ENST00000438120 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 10.1 ms