RNA–Protein interactions for RNA: ENST00000380518.7

COL2A1-202, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene COL2A1, Length 5,071 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-202ENST00000380518 FLGP20930 4061 aaPredicted RBP4.92□□□□□ -1.62
COL2A1-202ENST00000380518 LOC100996750A0A140TA64 210 aa4.85□□□□□ -1.63
COL2A1-202ENST00000380518 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
COL2A1-202ENST00000380518 PRM1P04553 51 aa4.82□□□□□ -1.64
COL2A1-202ENST00000380518 MT4P47944 62 aa4.79□□□□□ -1.64
COL2A1-202ENST00000380518 KRTAP19-7Q3SYF9 63 aa4.79□□□□□ -1.64
COL2A1-202ENST00000380518 UBR4Q5T4S7 5183 aa4.77□□□□□ -1.65
COL2A1-202ENST00000380518 RNF213Q63HN8 5207 aa4.74□□□□□ -1.65
COL2A1-202ENST00000380518 KRTAP9-2Q9BYQ4 174 aa4.72□□□□□ -1.65
COL2A1-202ENST00000380518 LCE2AQ5TA79 106 aaPredicted RBP4.71□□□□□ -1.66
COL2A1-202ENST00000380518 MT1AP04731 61 aa4.7□□□□□ -1.66
COL2A1-202ENST00000380518 FAT4Q6V0I7 4981 aa4.68□□□□□ -1.66
COL2A1-202ENST00000380518 FSIP2Q5CZC0 6907 aa4.67□□□□□ -1.66
COL2A1-202ENST00000380518 LCE1BQ5T7P3 118 aa4.67□□□□□ -1.66
COL2A1-202ENST00000380518 LCE1DQ5T752 114 aa4.66□□□□□ -1.66
COL2A1-202ENST00000380518 KRTAP2-3P0C7H8 128 aa4.63□□□□□ -1.67
COL2A1-202ENST00000380518 KRTAP2-4Q9BYR9 128 aa4.63□□□□□ -1.67
COL2A1-202ENST00000380518 KRTAP2-1Q9BYU5 128 aa4.63□□□□□ -1.67
COL2A1-202ENST00000380518 HMCN2Q8NDA2 5059 aa4.61□□□□□ -1.67
COL2A1-202ENST00000380518 MUC2Q02817 5179 aa4.58□□□□□ -1.68
COL2A1-202ENST00000380518 OBSCNQ5VST9 7968 aa4.55□□□□□ -1.68
COL2A1-202ENST00000380518 KRTAP4-9Q9BYQ8 210 aa4.53□□□□□ -1.68
COL2A1-202ENST00000380518 LCE1AQ5T7P2 110 aa4.44□□□□□ -1.7
COL2A1-202ENST00000380518 KRTAP9-6A0A140TA67 174 aa4.42□□□□□ -1.7
COL2A1-202ENST00000380518 KRTAP9-6A8MVA2 160 aa4.39□□□□□ -1.71
COL2A1-202ENST00000380518 KRTAP6-1Q3LI64 71 aa4.36□□□□□ -1.71
COL2A1-202ENST00000380518 LCE5AQ5TCM9 118 aa4.35□□□□□ -1.71
COL2A1-202ENST00000380518 SYNE2Q8WXH0 6885 aaKnown RBP4.34□□□□□ -1.72
COL2A1-202ENST00000380518 KRTAP6-2Q3LI66 62 aa4.31□□□□□ -1.72
COL2A1-202ENST00000380518 KRTAP6-3Q3LI67 103 aa4.3□□□□□ -1.72
COL2A1-202ENST00000380518 KRTAP9-4Q9BYQ2 154 aa4.29□□□□□ -1.72
COL2A1-202ENST00000380518 KRTAP20-1Q3LI63 56 aa4.28□□□□□ -1.72
COL2A1-202ENST00000380518 KRTAP9-7A8MTY7 169 aa4.23□□□□□ -1.73
COL2A1-202ENST00000380518 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
COL2A1-202ENST00000380518 FCGBPQ9Y6R7 5405 aaPredicted RBP4.12□□□□□ -1.75
COL2A1-202ENST00000380518 USH2AO75445 5202 aa4.12□□□□□ -1.75
COL2A1-202ENST00000380518 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.1□□□□□ -1.75
COL2A1-202ENST00000380518 KRTAP2-2Q9BYT5 123 aa4.07□□□□□ -1.76
COL2A1-202ENST00000380518 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
COL2A1-202ENST00000380518 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
COL2A1-202ENST00000380518 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
COL2A1-202ENST00000380518 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
COL2A1-202ENST00000380518 MACF1Q9UPN3 7388 aaKnown RBP3.92□□□□□ -1.78
COL2A1-202ENST00000380518 KMT2DO14686 5537 aa3.83□□□□□ -1.8
COL2A1-202ENST00000380518 MUC19Q7Z5P9 8384 aa3.74□□□□□ -1.81
COL2A1-202ENST00000380518 KRTAP5-9P26371 169 aa3.68□□□□□ -1.82
COL2A1-202ENST00000380518 NEBP20929 6669 aa3.63□□□□□ -1.83
COL2A1-202ENST00000380518 KRTAP9-9Q9BYP9 154 aa3.63□□□□□ -1.83
COL2A1-202ENST00000380518 MDN1Q9NU22 5596 aa3.62□□□□□ -1.83
COL2A1-202ENST00000380518 SSPOA2VEC9 5147 aa3.61□□□□□ -1.83
COL2A1-202ENST00000380518 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
COL2A1-202ENST00000380518 KRTAP4-6Q9BYQ5 205 aa3.54□□□□□ -1.84
COL2A1-202ENST00000380518 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
COL2A1-202ENST00000380518 KRTAP20-2Q3LI61 65 aa3.52□□□□□ -1.85
COL2A1-202ENST00000380518 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
COL2A1-202ENST00000380518 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
COL2A1-202ENST00000380518 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
COL2A1-202ENST00000380518 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
COL2A1-202ENST00000380518 KRTAP4-12Q9BQ66 201 aa3.17□□□□□ -1.9
COL2A1-202ENST00000380518 KRTAP4-2Q9BYR5 136 aa3.17□□□□□ -1.9
COL2A1-202ENST00000380518 MUC5ACP98088 5654 aa3□□□□□ -1.93
COL2A1-202ENST00000380518 HMCN1Q96RW7 5635 aa2.93□□□□□ -1.94
COL2A1-202ENST00000380518 KRTAP5-3Q6L8H2 238 aa2.84□□□□□ -1.95
COL2A1-202ENST00000380518 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
COL2A1-202ENST00000380518 KRTAP5-10Q6L8G5 202 aa2.63□□□□□ -1.99
COL2A1-202ENST00000380518 KRTAP5-8O75690 187 aa2.59□□□□□ -2
COL2A1-202ENST00000380518 KRTAP5-2Q701N4 177 aa2.54□□□□□ -2
COL2A1-202ENST00000380518 MUC5BQ9HC84 5762 aaPredicted RBP2.42□□□□□ -2.02
COL2A1-202ENST00000380518 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
COL2A1-202ENST00000380518 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
COL2A1-202ENST00000380518 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
COL2A1-202ENST00000380518 KRTAP5-1Q6L8H4 278 aa2.3□□□□□ -2.04
COL2A1-202ENST00000380518 KRTAP21-2Q3LI59 83 aa2.21□□□□□ -2.06
COL2A1-202ENST00000380518 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.06□□□□□ -2.08
COL2A1-202ENST00000380518 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
COL2A1-202ENST00000380518 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
COL2A1-202ENST00000380518 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 80.5 ms