RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 KRTAP9-2Q9BYQ4 174 aa2.89□□□□□ -1.95
SYNE1-205ENST00000367251 KRTAP19-6Q3LI70 58 aa2.87□□□□□ -1.95
SYNE1-205ENST00000367251 MT3P25713 68 aa2.87□□□□□ -1.95
SYNE1-205ENST00000367251 KRTAP9-6A0A140TA67 174 aa2.86□□□□□ -1.95
SYNE1-205ENST00000367251 KRTAP20-1Q3LI63 56 aa2.83□□□□□ -1.96
SYNE1-205ENST00000367251 MT1MQ8N339 61 aa2.83□□□□□ -1.96
SYNE1-205ENST00000367251 LCE5AQ5TCM9 118 aa2.83□□□□□ -1.96
SYNE1-205ENST00000367251 KRTAP4-7Q9BYR0 210 aa2.82□□□□□ -1.96
SYNE1-205ENST00000367251 PCLOQ9Y6V0 5065 aa2.81□□□□□ -1.96
SYNE1-205ENST00000367251 KRTAP19-7Q3SYF9 63 aa2.75□□□□□ -1.97
SYNE1-205ENST00000367251 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
SYNE1-205ENST00000367251 LCE2AQ5TA79 106 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-205ENST00000367251 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
SYNE1-205ENST00000367251 KRTAP2-1Q9BYU5 128 aa2.74□□□□□ -1.97
SYNE1-205ENST00000367251 MUC2Q02817 5179 aa2.73□□□□□ -1.97
SYNE1-205ENST00000367251 SYNE2Q8WXH0 6885 aaKnown RBP2.71□□□□□ -1.97
SYNE1-205ENST00000367251 KRTAP9-7A8MTY7 169 aa2.71□□□□□ -1.97
SYNE1-205ENST00000367251 LCE1CQ5T751 118 aa2.7□□□□□ -1.98
SYNE1-205ENST00000367251 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
SYNE1-205ENST00000367251 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
SYNE1-205ENST00000367251 LCE1AQ5T7P2 110 aa2.7□□□□□ -1.98
SYNE1-205ENST00000367251 MT1AP04731 61 aa2.68□□□□□ -1.98
SYNE1-205ENST00000367251 LOC100996750A0A140TA64 210 aa2.66□□□□□ -1.98
SYNE1-205ENST00000367251 PRM1P04553 51 aa2.66□□□□□ -1.98
SYNE1-205ENST00000367251 KRTAP4-3Q9BYR4 195 aa2.63□□□□□ -1.99
SYNE1-205ENST00000367251 FSIP2Q5CZC0 6907 aa2.61□□□□□ -1.99
SYNE1-205ENST00000367251 HMCN2Q8NDA2 5059 aa2.6□□□□□ -1.99
SYNE1-205ENST00000367251 RNF213Q63HN8 5207 aa2.6□□□□□ -1.99
SYNE1-205ENST00000367251 FAT4Q6V0I7 4981 aa2.59□□□□□ -1.99
SYNE1-205ENST00000367251 MACF1Q9UPN3 7388 aaKnown RBP2.59□□□□□ -2
SYNE1-205ENST00000367251 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SYNE1-205ENST00000367251 OBSCNQ5VST9 7968 aa2.57□□□□□ -2
SYNE1-205ENST00000367251 KRTAP4-9Q9BYQ8 210 aa2.55□□□□□ -2
SYNE1-205ENST00000367251 KRTAP9-6A8MVA2 160 aa2.52□□□□□ -2.01
SYNE1-205ENST00000367251 KRTAP2-2Q9BYT5 123 aa2.5□□□□□ -2.01
SYNE1-205ENST00000367251 UBR4Q5T4S7 5183 aa2.5□□□□□ -2.01
SYNE1-205ENST00000367251 KRTAP6-3Q3LI67 103 aa2.49□□□□□ -2.01
SYNE1-205ENST00000367251 KRTAP9-4Q9BYQ2 154 aa2.47□□□□□ -2.01
SYNE1-205ENST00000367251 LCE4AQ5TA78 99 aa2.45□□□□□ -2.02
SYNE1-205ENST00000367251 KRTAP6-1Q3LI64 71 aa2.45□□□□□ -2.02
SYNE1-205ENST00000367251 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.44□□□□□ -2.02
SYNE1-205ENST00000367251 KRTAP9-9Q9BYP9 154 aa2.4□□□□□ -2.02
SYNE1-205ENST00000367251 DSTQ03001 7570 aaKnown RBP2.39□□□□□ -2.03
SYNE1-205ENST00000367251 KRTAP6-2Q3LI66 62 aa2.39□□□□□ -2.03
SYNE1-205ENST00000367251 MUC19Q7Z5P9 8384 aa2.28□□□□□ -2.04
SYNE1-205ENST00000367251 NEBP20929 6669 aa2.26□□□□□ -2.05
SYNE1-205ENST00000367251 KRTAP5-9P26371 169 aa2.2□□□□□ -2.06
SYNE1-205ENST00000367251 USH2AO75445 5202 aa2.16□□□□□ -2.06
SYNE1-205ENST00000367251 KMT2DO14686 5537 aa2.12□□□□□ -2.07
SYNE1-205ENST00000367251 KRTAP20-2Q3LI61 65 aa2.11□□□□□ -2.07
SYNE1-205ENST00000367251 SSPOA2VEC9 5147 aa2.1□□□□□ -2.07
SYNE1-205ENST00000367251 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
SYNE1-205ENST00000367251 FCGBPQ9Y6R7 5405 aaPredicted RBP2.06□□□□□ -2.08
SYNE1-205ENST00000367251 MUC12Q9UKN1 5478 aa2.02□□□□□ -2.09
SYNE1-205ENST00000367251 KRTAP4-12Q9BQ66 201 aa2□□□□□ -2.09
SYNE1-205ENST00000367251 KRTAP4-2Q9BYR5 136 aa2□□□□□ -2.09
SYNE1-205ENST00000367251 KRTAP4-6Q9BYQ5 205 aa1.98□□□□□ -2.09
SYNE1-205ENST00000367251 KRTAP4-11Q9BYQ6 195 aa1.96□□□□□ -2.1
SYNE1-205ENST00000367251 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
SYNE1-205ENST00000367251 KRTAP5-5Q701N2 237 aaPredicted RBP1.94□□□□□ -2.1
SYNE1-205ENST00000367251 KRTAP5-4Q6L8H1 288 aa1.93□□□□□ -2.1
SYNE1-205ENST00000367251 AHNAK2Q8IVF2 5795 aa1.77□□□□□ -2.13
SYNE1-205ENST00000367251 KRTAP5-3Q6L8H2 238 aa1.67□□□□□ -2.14
SYNE1-205ENST00000367251 MUC5ACP98088 5654 aa1.65□□□□□ -2.14
SYNE1-205ENST00000367251 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
SYNE1-205ENST00000367251 PHGR1C9JFL3 82 aa1.64□□□□□ -2.15
SYNE1-205ENST00000367251 KRTAP5-2Q701N4 177 aa1.61□□□□□ -2.15
SYNE1-205ENST00000367251 KRTAP5-10Q6L8G5 202 aa1.55□□□□□ -2.16
SYNE1-205ENST00000367251 KRTAP5-8O75690 187 aa1.46□□□□□ -2.18
SYNE1-205ENST00000367251 AHNAKQ09666 5890 aaKnown RBP1.44□□□□□ -2.18
SYNE1-205ENST00000367251 KRTAP5-11Q6L8G4 156 aa1.41□□□□□ -2.18
SYNE1-205ENST00000367251 MUC5BQ9HC84 5762 aaPredicted RBP1.4□□□□□ -2.19
SYNE1-205ENST00000367251 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
SYNE1-205ENST00000367251 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.34□□□□□ -2.19
SYNE1-205ENST00000367251 KRTAP5-1Q6L8H4 278 aa1.34□□□□□ -2.19
SYNE1-205ENST00000367251 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
SYNE1-205ENST00000367251 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
SYNE1-205ENST00000367251 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 44.4 ms